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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, vacuole
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G156000.1 Wheat cytosol 24.17 21.89
TraesCS2B01G181500.1 Wheat cytosol 24.17 21.61
OQU89393 Sorghum plasma membrane 23.7 21.19
TraesCS2D01G161800.1 Wheat cytosol 22.75 20.6
CDY37785 Canola nucleus 19.91 6.71
CDX80080 Canola nucleus 19.91 6.29
Bra004478.1-P Field mustard nucleus 19.91 6.28
GSMUA_Achr5P20970_001 Banana nucleus 19.91 5.91
AT2G47090.1 Thale cress nucleus 20.38 5.61
Bra003493.1-P Field mustard nucleus 19.91 5.22
AT3G62240.1 Thale cress nucleus 19.91 5.17
KRH68317 Soybean nucleus 19.43 4.93
KXG39981 Sorghum nucleus 18.96 4.79
VIT_07s0005g02190.t01 Wine grape nucleus 18.48 4.77
KRG96582 Soybean nucleus 18.01 4.56
Solyc01g068390.2.1 Tomato nucleus 17.54 4.21
PGSC0003DMT400046261 Potato nucleus 17.54 4.2
Protein Annotations
EnsemblPlants:OQU89392EnsemblPlantsGene:SORBI_3002G182500GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR22938
PANTHER:PTHR22938:SF6ProteinID:OQU89392ProteinID:OQU89392.1SEG:segTMHMM:TMhelixUniParc:UPI0009DC85A2
UniProt:A0A1W0W4U9MapMan:35.2::::
Description
hypothetical protein
Coordinates
chr2:+:56434672..56436573
Molecular Weight (calculated)
23196.0 Da
IEP (calculated)
8.091
GRAVY (calculated)
0.065
Length
211 amino acids
Sequence
(BLAST)
001: MEPPEWVIVG ACGHREVCLY CGVRMRFFQD DRRCCICRAL CATVVVTRAN TNSRPPQLVV VVDDGGRQSS VFSETSPAFG GVRLAGTTHR WYYHGGMAAY
101: FDDRALYEAV RNMCSKPLPL PLPLPLPLPA GAGNNTRHRA LQDPNTDPTC FVPYLALTAF VGAAGSIPLV MQYLKDWLLR VAVVIVSGVL AAAWSYFHSR
201: MCTPESDADR S
Best Arabidopsis Sequence Match ( AT2G47090.5 )
(BLAST)
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCSLC LVGRKVFICE QKLFTKGQLN QHISSGDSEV DGSESERGGF TGHPMCEFCK RPFYGDNELY THMSREHYTC HICQRLKPGQ YEYYGNYDDL
201: EVHFRSDHFL CEDETCLAKK FIVFQIEAEL KRHNAIDHGG RMSRSQQNAS LQIQASFQYP NSRRGRRRSS LREPNLVLLE SQASYAFNDD NNLPQHVGRS
301: GNSRLGESSF PPLSVQANQG QSRFGQNSES LVSNTTTTRQ RHRANQGQSR FGQNSESLVS NTTTTRQRHQ TNRSATSGSS QAWPALNRGP AEISITSRVQ
401: SSGASAQSQS RHHDRVESTR TLASAVPQDA RTTVGGCSSG SSLSSANATK RNNHHSSSTP KMSETRSLAQ PSHSDSPQIS AVKNRRSSST SANAGNIQVA
501: QGVSDVQSDN KSLVEKIHAS LGHDEELFMA FKNTSGKYRH GSIDARTYLE YVKGYGLSHL VLDMARLCPD PQRQKELIDT HNACLKGGNK GKAVKVESSS
601: DSKGDRFVDT VRKLQFSDKS QDKDKDKDAY RSDKGKTKVT TLVNSSSAGV GLGDTGKQPK KTSKFLRTRL GEKSMAAVLD LRNSNPEPEP EPKNDNSKRS
701: QNSPGGLPLR GAWKRGSAKL FV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.