CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68317	Soybean	nucleus	93.4	93.51
GSMUA_Achr8P10850_001	Banana	cytosol	13.33	65.29
VIT_07s0005g02190.t01	Wine grape	nucleus	60.98	62.1
AT3G62240.1	Thale cress	nucleus	48.62	49.88
Bra003493.1-P	Field mustard	nucleus	48.14	49.81
Zm00001d048205_P003	Maize	nucleus	34.81	48.58
AT2G47090.1	Thale cress	nucleus	43.82	47.65
Zm00001d048207_P001	Maize	nucleus	32.17	46.37
KXG39981	Sorghum	nucleus	46.34	46.23
GSMUA_Achr5P20970_001	Banana	nucleus	39.26	45.99
Os05t0279400-01	Rice	plasma membrane	46.82	45.72
Zm00001d028020_P001	Maize	nucleus	45.86	45.31
CDY37785	Canola	nucleus	33.85	45.05
TraesCS1A01G139500.1	Wheat	nucleus	46.22	44.98
CDX80080	Canola	nucleus	36.01	44.91
Bra004478.1-P	Field mustard	nucleus	36.01	44.84
TraesCS1B01G154700.2	Wheat	nucleus	46.34	44.52
HORVU1Hr1G032900.1	Barley	endoplasmic reticulum, mitochondrion, nucleus	45.62	42.36
TraesCS3B01G201500.1	Wheat	nucleus	35.53	41.81
TraesCS3D01G176900.1	Wheat	nucleus	35.53	41.69
TraesCS3A01G164600.4	Wheat	nucleus	35.17	37.32
HORVU3Hr1G034270.3	Barley	nucleus, plastid	34.21	36.92
Os01t0251200-01	Rice	extracellular	32.29	36.5
TraesCS5A01G347000.1	Wheat	nucleus	40.22	31.13
TraesCS5B01G347900.1	Wheat	nucleus	39.98	30.72
TraesCS5D01G353400.1	Wheat	nucleus	40.34	30.03
OQU89392	Sorghum	cytosol, plasma membrane, vacuole	4.56	18.01
TraesCS2D01G161800.1	Wheat	cytosol	4.92	17.6
TraesCS2A01G156000.1	Wheat	cytosol	4.92	17.6
TraesCS2B01G181500.1	Wheat	cytosol	4.92	17.37
OQU89393	Sorghum	plasma membrane	4.56	16.1

Protein Annotations

EntrezGene:100780426	MapMan:15.5.15	EMBL:ACUP02012157	EnsemblPlantsGene:GLYMA_19G220000	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001841	InterPro:IPR013087	UniProt:K7MZM1	EnsemblPlants:KRG96582	ProteinID:KRG96582
ProteinID:KRG96582.1	PFscan:PS50089	PANTHER:PTHR22938	PANTHER:PTHR22938:SF6	SMART:SM00355	UniParc:UPI000296D182
InterPro:Znf_C2H2_type	InterPro:Znf_RING	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:47221069..47225705

Molecular Weight (calculated)

92651.2 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.750

Length

833 amino acids

Sequence
(BLAST)

001: MDDCCAVCAE PLEWVAYGPC LHREVCSTCV ARLRFICDDR LCCICKTECN LVFATKALGD YTRMINDFST LPSEVREGKV GSYWYHEDTN TFFDDMDHYR
101: MIKAMCRLSC SVCDKIEDQP QDAASRRRAK FRNIGQLKGH LFHRHKLHMC NLCLEGRKVF ICEQKLYTKA QLNQHIISGD SEVDGSESER GGFMGHPMCE
201: FCRTPFYGDN ELYMHMSTEH YTCHICQRQH PGQYEYYKNY DDLEIHFRQE HFLCEDEACL TKKFVVFQSE AEMKRHNAIE HGGRMSRSKR NAALQIPTSF
301: RYRHGNEHEQ RRGRGRTFRR DTENQLSMAI EASLETANAE RTFRDQSTSS IGQIAVDDGN DDIDSLIQPF ESLAAGGSES SARYLQALGH SSRNGPLEDS
401: SFPPLPITSS NGQQRSKHEL EGSSSNTMAA RLRRHGNRTV SVVNSGNAWP AAGRGLVQTS SNPSQSKPST NNVLGLSRNT GQMKTVINSG PSSSTYAGSI
501: QATQRTTHGQ LPAGSSRNTR DNVRIVHSAS APNLMENNSV EISISDFPPV SAAQVSKLPA SSQSKLNVEN FQSANKSLVE KIRGALDFDE ERYSIFKDIS
601: AQYRQGTIDT GTYVDYVQQF GLSHLVLELA RLCPDTQKQK ELIEAHNASL QRDAFPEINL VRGTASTHHK DGNLNKKGKG KSVDSRGSNS TEKLADSFLS
701: TVHQLQANYK SSEEKVEVLS RGDYRTDRGK LKIKQQIDSN PGSQPTMKLG GQTETSNGSL SDQSKEDGGG GNKQRKKTSK FLRVRLGDGS VSSLLDQSDP
801: GTTDSSEGNN DDVGGGPPVR GVWRKGGGHK LFP

Best Arabidopsis Sequence Match ( AT3G62240.1 )
(BLAST)

001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS

Arabidopsis Description

At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.