Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G139500.1 | Wheat | nucleus | 95.73 | 96.96 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 94.35 | 91.19 |
| Os05t0279400-01 | Rice | plasma membrane | 75.2 | 76.44 |
| KXG39981 | Sorghum | nucleus | 69.67 | 72.34 |
| Zm00001d028020_P001 | Maize | nucleus | 69.55 | 71.53 |
| Zm00001d048205_P003 | Maize | nucleus | 44.06 | 63.99 |
| Zm00001d048207_P001 | Maize | nucleus | 41.41 | 62.11 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 73.47 | 58.76 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 43.37 | 53.11 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 46.71 | 49.51 |
| KRH68317 | Soybean | nucleus | 45.1 | 47.0 |
| KRG96582 | Soybean | nucleus | 44.52 | 46.34 |
| Bra003493.1-P | Field mustard | nucleus | 42.1 | 45.34 |
| PGSC0003DMT400046261 | Potato | nucleus | 45.67 | 45.0 |
| Solyc01g068390.2.1 | Tomato | nucleus | 45.56 | 44.94 |
| AT3G62240.1 | Thale cress | nucleus | 41.98 | 44.83 |
| AT2G47090.1 | Thale cress | nucleus | 39.33 | 44.52 |
| Bra004478.1-P | Field mustard | nucleus | 34.26 | 44.39 |
| CDX80080 | Canola | nucleus | 34.03 | 44.16 |
| CDY37785 | Canola | nucleus | 31.49 | 43.61 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 5.07 | 18.64 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G154700.2 | EnsemblPlantsGene:TraesCS1B01G154700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | ncoils:Coil | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 |
| PFscan:PS50089 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr1B:+:259509652..259514938
Molecular Weight (calculated)
95792.1 Da
IEP (calculated)
8.248
GRAVY (calculated)
-0.666
Length
867 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVLEDS LCCICKTDCP SVFVTKAMGD YTKVILDFSV LPTEANEGNV GEYWYHEDTK AYFDDADHYK
101: MIRAMCRLSC SVCDKAEDQV GQAAQAKRRS RFKSIDQLKG HLFHQHRLYM CNLCLEGRKV FICEQKLYTR AQLAQHTKTG DSEVDGSEIE RSGFAGHPVC
201: EFCKYPLYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLEMHFRK DHFLCEDDAC LAKKFVVFQS DAEIKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYQRNEQDQ RRGRGRGHNA HHDRFDRDFS LSVRDGSATA DHGLGSRVDS VAGPFQSLSV SSSSGRSRTE IGRSLGNRRV LEQLSFPPLQ DQDIPDARID
401: AVPYETLFPP VSEQQSRYAL ALNQSSRGSA RLGDESLFPP LPGSSNKGSA STQQGLQSLA KNTLASRLQQ RSKGSVKVLY SAQSQTGENP EIVPHVSTST
501: QTWPTPDQGL HLSGSSQLRI VTQSTRDNGL MPSASSGSAW NSRASNKMKH SISTPNFVSG GSSAQASSST AYGNKKQLPP QSSQPLPVVE DVRQANKSLV
601: ERMRVALGMD EDRFSAFKEI ASEYRQGVID TSEYLSYVEQ FGISHLVPEM AKLLPDPLKQ MELADAYYTN MRFKSLQENG GCETITVKEN KRKNKGKGKT
701: LDAETATAKD ASESLADSFM DTVRKLQSNN KAQEGEAAVL SKDGYRSSKE KIPLSAGGSS CGTKMCLDGD PVAISKASGT SRYVGKGGGS TGSSSSSSSN
801: NKQSKKTSKF LRARLGDNSL ATLDFSHPDV SPERPERETQ VLQTGLPVRS VWKNGAAQKL FSSNGKK
101: MIRAMCRLSC SVCDKAEDQV GQAAQAKRRS RFKSIDQLKG HLFHQHRLYM CNLCLEGRKV FICEQKLYTR AQLAQHTKTG DSEVDGSEIE RSGFAGHPVC
201: EFCKYPLYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLEMHFRK DHFLCEDDAC LAKKFVVFQS DAEIKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYQRNEQDQ RRGRGRGHNA HHDRFDRDFS LSVRDGSATA DHGLGSRVDS VAGPFQSLSV SSSSGRSRTE IGRSLGNRRV LEQLSFPPLQ DQDIPDARID
401: AVPYETLFPP VSEQQSRYAL ALNQSSRGSA RLGDESLFPP LPGSSNKGSA STQQGLQSLA KNTLASRLQQ RSKGSVKVLY SAQSQTGENP EIVPHVSTST
501: QTWPTPDQGL HLSGSSQLRI VTQSTRDNGL MPSASSGSAW NSRASNKMKH SISTPNFVSG GSSAQASSST AYGNKKQLPP QSSQPLPVVE DVRQANKSLV
601: ERMRVALGMD EDRFSAFKEI ASEYRQGVID TSEYLSYVEQ FGISHLVPEM AKLLPDPLKQ MELADAYYTN MRFKSLQENG GCETITVKEN KRKNKGKGKT
701: LDAETATAKD ASESLADSFM DTVRKLQSNN KAQEGEAAVL SKDGYRSSKE KIPLSAGGSS CGTKMCLDGD PVAISKASGT SRYVGKGGGS TGSSSSSSSN
801: NKQSKKTSKF LRARLGDNSL ATLDFSHPDV SPERPERETQ VLQTGLPVRS VWKNGAAQKL FSSNGKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.