Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048207_P001 | Maize | nucleus | 88.78 | 91.7 |
| KXG39981 | Sorghum | nucleus | 75.54 | 54.01 |
| Zm00001d028020_P001 | Maize | nucleus | 74.04 | 52.43 |
| Os05t0279400-01 | Rice | plasma membrane | 64.82 | 45.37 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 63.65 | 44.39 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 63.99 | 44.06 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 63.65 | 42.36 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 49.08 | 41.38 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 48.41 | 40.7 |
| CDY37785 | Canola | nucleus | 39.36 | 37.54 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 49.08 | 37.32 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 46.9 | 36.27 |
| Os01t0251200-01 | Rice | extracellular | 44.05 | 35.69 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 48.74 | 35.57 |
| CDX80080 | Canola | nucleus | 39.53 | 35.33 |
| KRH68317 | Soybean | nucleus | 48.91 | 35.1 |
| KRG96582 | Soybean | nucleus | 48.58 | 34.81 |
| Bra004478.1-P | Field mustard | nucleus | 38.86 | 34.68 |
| Bra003493.1-P | Field mustard | nucleus | 45.39 | 33.66 |
| AT3G62240.1 | Thale cress | nucleus | 44.39 | 32.64 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 58.79 | 32.62 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 58.96 | 32.47 |
| AT2G47090.1 | Thale cress | nucleus | 40.87 | 31.85 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 59.13 | 31.55 |
| PGSC0003DMT400046261 | Potato | nucleus | 45.56 | 30.91 |
| Solyc01g068390.2.1 | Tomato | nucleus | 45.23 | 30.72 |
Protein Annotations
| EntrezGene:103639484 | MapMan:15.5.15 | UniProt:A0A1D6PIH6 | ProteinID:AQL09126.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | ScanProsite:PS00028 | PFscan:PS50089 | PANTHER:PTHR22938 |
| PANTHER:PTHR22938:SF6 | SMART:SM00355 | UniParc:UPI000845394C | EnsemblPlantsGene:Zm00001d048205 | EnsemblPlants:Zm00001d048205_P003 | EnsemblPlants:Zm00001d048205_T003 |
| InterPro:Znf_C2H2_type | InterPro:Znf_RING | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr9:-:152408526..152412651
Molecular Weight (calculated)
67860.7 Da
IEP (calculated)
7.289
GRAVY (calculated)
-0.657
Length
597 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFCAVCAD TLEWVAYGSC GHRDVCSTCI VRLRFVMGDN KCCICKTVCP FVFVTKAMGK YTRVITDFSV LPAGVNEGKA GDFWYHEDTK AYFDDADHYR
101: MIRTMCQLSC NVCDNAEDQV AQAKRKSKFR SIEQLKGHLY CVHRLHMCNL CLEGRKVFIC EQKLYLKSQL AQHMKTGDSE VDGSEVERNG FAGHPMCEFC
201: RSSFYGDSEL YMHMSREHYS CHICKRQNPG RVEYFANYED IELHFREDHF LCEDEACLEK KFVVFLSKAQ LKASWNKLLK HNAMEHGGRM SRSQRNAALE
301: TPSSFIYRRN EQEQRRGRGR NAFHDGSDCH ISSSANAFHD RSDCHISSSA NAFHDKSDCH IPSTAQKDRA AADGHAGRLD NVSESFQSLS IGSSSREAEV
401: GEGSRTGRVL EQLSFRPLSD PDIPDNSVET SFPSLSEQQS SLNQSARDAP RLGDESLFPP LTGSSNKMKQ PVFTPKRPRT FPAAEDIHAA KMRYALGMNE
501: DMYSAFKEIA GEYRRGTIDA FEYLSYVEQF GLSHLVPEMV RLLPDSRKQR ELADAHYTNT RLKNLQENGN NRKGGFFLSK KKSLQENGGG TSEWRWN
101: MIRTMCQLSC NVCDNAEDQV AQAKRKSKFR SIEQLKGHLY CVHRLHMCNL CLEGRKVFIC EQKLYLKSQL AQHMKTGDSE VDGSEVERNG FAGHPMCEFC
201: RSSFYGDSEL YMHMSREHYS CHICKRQNPG RVEYFANYED IELHFREDHF LCEDEACLEK KFVVFLSKAQ LKASWNKLLK HNAMEHGGRM SRSQRNAALE
301: TPSSFIYRRN EQEQRRGRGR NAFHDGSDCH ISSSANAFHD RSDCHISSSA NAFHDKSDCH IPSTAQKDRA AADGHAGRLD NVSESFQSLS IGSSSREAEV
401: GEGSRTGRVL EQLSFRPLSD PDIPDNSVET SFPSLSEQQS SLNQSARDAP RLGDESLFPP LTGSSNKMKQ PVFTPKRPRT FPAAEDIHAA KMRYALGMNE
501: DMYSAFKEIA GEYRRGTIDA FEYLSYVEQF GLSHLVPEMV RLLPDSRKQR ELADAHYTNT RLKNLQENGN NRKGGFFLSK KKSLQENGGG TSEWRWN
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.