Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048205_P003 | Maize | nucleus | 91.7 | 88.78 |
| KXG39981 | Sorghum | nucleus | 73.88 | 51.14 |
| Zm00001d028020_P001 | Maize | nucleus | 72.49 | 49.7 |
| Os05t0279400-01 | Rice | plasma membrane | 61.94 | 41.97 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 61.42 | 41.47 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 62.11 | 41.41 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 61.59 | 39.69 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 46.37 | 37.85 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 46.19 | 37.61 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 46.71 | 34.39 |
| CDY37785 | Canola | nucleus | 36.16 | 33.39 |
| Os01t0251200-01 | Rice | extracellular | 42.39 | 33.24 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 46.89 | 33.13 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 44.12 | 33.03 |
| KRH68317 | Soybean | nucleus | 47.23 | 32.81 |
| KRG96582 | Soybean | nucleus | 46.37 | 32.17 |
| CDX80080 | Canola | nucleus | 36.85 | 31.89 |
| Bra003493.1-P | Field mustard | nucleus | 43.43 | 31.18 |
| Bra004478.1-P | Field mustard | nucleus | 35.81 | 30.94 |
| AT3G62240.1 | Thale cress | nucleus | 42.56 | 30.3 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 56.23 | 30.2 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 55.88 | 29.8 |
| PGSC0003DMT400046261 | Potato | nucleus | 44.29 | 29.09 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 56.06 | 28.95 |
| Solyc01g068390.2.1 | Tomato | nucleus | 43.77 | 28.78 |
| AT2G47090.1 | Thale cress | nucleus | 38.06 | 28.72 |
Protein Annotations
| MapMan:15.5.15 | UniProt:A0A1D6PII0 | ProteinID:AQL09127.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001841 | InterPro:IPR013087 | ScanProsite:PS00028 | PFscan:PS50089 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 |
| SMART:SM00355 | UniParc:UPI0008455600 | EnsemblPlantsGene:Zm00001d048207 | EnsemblPlants:Zm00001d048207_P001 | EnsemblPlants:Zm00001d048207_T001 | InterPro:Znf_C2H2_type |
| InterPro:Znf_RING | SEG:seg | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr9:-:152500496..152504181
Molecular Weight (calculated)
65286.0 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.735
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFCAVCAD TMDWVAYGLC GHREVCSTCV ARLRLVMDDK RCCICKTVCP SVFVTKAMGK YTRVVTDFSV FPNGANEGKA GDFWYHGDTQ AYFDDADHYR
101: MIRSMCQLSC NVCDNAEDQD ALAAQAKRRS KFRNIDQLKG HLYHVHRLHM CNLCLEGRKV FICEQKLYLK SQLAQHMKTG DSEVDGSEVE RNGFAGHPMC
201: EFCRSSFYGD SELYMHTSRE HYSCHICKRQ NPGRVEYFAN YEDIEKHNAM EHGGRMSRSQ RNAALETPSS FIYRRNEQEQ RRGRGGNAFH DRSNCHISSS
301: ANAFHDGFDC HISSSANAFH DRSDCHISSS ANAFHDKSDC HIPSTAQKDR AAADGHAERL DNVSESFQSL SIGSSSREAE VGEGSRTGRV LEQLSFRPLS
401: DPDIPDNSVE TSSPSLSEQQ SSLNQSARDA PRLGDESLFP PLTGSSNKMK QPVFTPKRPR TFPAAEDIHA AKMRYALGMN EDMYSAFKEI AGEYRRGTID
501: AFEYLSYVEQ FGLSHLVPEM ARLLPDSRKQ RELADAHYTN TRLKNLQENG NNRKGGFFLS KKKSLQENGG GTSQWRWN
101: MIRSMCQLSC NVCDNAEDQD ALAAQAKRRS KFRNIDQLKG HLYHVHRLHM CNLCLEGRKV FICEQKLYLK SQLAQHMKTG DSEVDGSEVE RNGFAGHPMC
201: EFCRSSFYGD SELYMHTSRE HYSCHICKRQ NPGRVEYFAN YEDIEKHNAM EHGGRMSRSQ RNAALETPSS FIYRRNEQEQ RRGRGGNAFH DRSNCHISSS
301: ANAFHDGFDC HISSSANAFH DRSDCHISSS ANAFHDKSDC HIPSTAQKDR AAADGHAERL DNVSESFQSL SIGSSSREAE VGEGSRTGRV LEQLSFRPLS
401: DPDIPDNSVE TSSPSLSEQQ SSLNQSARDA PRLGDESLFP PLTGSSNKMK QPVFTPKRPR TFPAAEDIHA AKMRYALGMN EDMYSAFKEI AGEYRRGTID
501: AFEYLSYVEQ FGLSHLVPEM ARLLPDSRKQ RELADAHYTN TRLKNLQENG NNRKGGFFLS KKKSLQENGG GTSQWRWN
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.