Subcellular Localization
min:
: max
Winner_takes_all: nucleus, endoplasmic reticulum, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G139500.1 | Wheat | nucleus | 90.75 | 95.09 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 91.19 | 94.35 |
| Os05t0279400-01 | Rice | plasma membrane | 72.24 | 75.97 |
| KXG39981 | Sorghum | nucleus | 66.56 | 71.5 |
| Zm00001d028020_P001 | Maize | nucleus | 66.22 | 70.46 |
| Zm00001d048205_P003 | Maize | nucleus | 42.36 | 63.65 |
| Zm00001d048207_P001 | Maize | nucleus | 39.69 | 61.59 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 44.7 | 49.02 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 40.13 | 46.63 |
| KRH68317 | Soybean | nucleus | 42.92 | 46.27 |
| Bra003493.1-P | Field mustard | nucleus | 41.03 | 45.71 |
| KRG96582 | Soybean | nucleus | 42.36 | 45.62 |
| AT2G47090.1 | Thale cress | nucleus | 38.24 | 44.78 |
| AT3G62240.1 | Thale cress | nucleus | 40.47 | 44.7 |
| Solyc01g068390.2.1 | Tomato | nucleus | 43.59 | 44.48 |
| PGSC0003DMT400046261 | Potato | nucleus | 43.59 | 44.43 |
| Bra004478.1-P | Field mustard | nucleus | 32.78 | 43.95 |
| CDX80080 | Canola | nucleus | 32.55 | 43.71 |
| CDY37785 | Canola | nucleus | 30.32 | 43.45 |
| HORVU5Hr1G086470.1 | Barley | plastid | 30.77 | 33.01 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.40.10 | UniProt:A0A287F388 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| EnsemblPlantsGene:HORVU1Hr1G032900 | EnsemblPlants:HORVU1Hr1G032900.1 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | PFscan:PS50089 |
| PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | SMART:SM00355 | UniParc:UPI000B473786 | InterPro:Znf_C2H2_type | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:204159724..204166158
Molecular Weight (calculated)
99348.4 Da
IEP (calculated)
8.432
GRAVY (calculated)
-0.671
Length
897 amino acids
Sequence
(BLAST)
(BLAST)
001: AKPVHRVSNL LAFFPTLTLF RRRRPLFRCY RPLPPAEMDD SCAVCADALE WVAYGPCGHR EVCSTCVVRL RFVLEDSLCC ICKTDCPSVF VTKAMGDYTK
101: VISDFSVLPT EASEGNVGEY WYHEDTKAYF DDADHYKMIR AMCRLSCSVC DKAEDQVGQA AQAKRRSRFK SIDQLKGHLF HQHRLYMCNL CLEGRKVFIC
201: EQKLYTRAQL TQHTKTGDSE VDGSEVERSG FAGHPVCEYC KYPLYGDNEL YTHMSREHYS CHICQRQHPG HYDYFRNYDD LEMHFRKDHF LCEDDVCLAK
301: KFVVFQSDAE IKRHNAMEHG GRMSRAQRNA ALQIPTSFIY QRNEQDQRRG RGRGRNAHHD RPDRDFPLPV RDGSATADHG LGSQVDSVAG PFQSVSVSSS
401: SGRTETGRSF GNGRVLEQLS FPPLQDQDIP DARMDAIPYE TSFPPVSEQQ SRYALALNQS SRGSARLGDE SLFPPLPGSS NKGSASTQQG LQSLAKNTLA
501: SRLQQRSKGT VKVLYSARSQ TAENPEIVPH VSTSTQTWPK PDQGLHLSGS SQLRIVTQST RDNGLMPSAS SGSAWNSRAS NKMKHSTSTP NFVSGGSSAQ
601: ASSSTAYGNK SQLPPQSSQP LPVVEDVQQA NKSLVERMRV ALGMDEDRFS AFKEIASEYR QGVIDTSEYL SYVEQFGISH LVPEMARLLP DPLKQMELAD
701: AYYTNMRFKS LQENGGCEGI TVKENKRKNK GKGKTPDAET VTAKDASESL ADSFIDTVRK LQSNNKTQGE AAVLSKDGYR SSKEKIPLSA GGSCSGTNLG
801: LDGDPVAISK ASGTSRYVGK GGGSSSSSSS DKQSKKTSKF LRARLGDNSL ATLDFSHPDV SPERPEKETQ VLQTGLPVRS VWKNGAAQKL FSSNEKK
101: VISDFSVLPT EASEGNVGEY WYHEDTKAYF DDADHYKMIR AMCRLSCSVC DKAEDQVGQA AQAKRRSRFK SIDQLKGHLF HQHRLYMCNL CLEGRKVFIC
201: EQKLYTRAQL TQHTKTGDSE VDGSEVERSG FAGHPVCEYC KYPLYGDNEL YTHMSREHYS CHICQRQHPG HYDYFRNYDD LEMHFRKDHF LCEDDVCLAK
301: KFVVFQSDAE IKRHNAMEHG GRMSRAQRNA ALQIPTSFIY QRNEQDQRRG RGRGRNAHHD RPDRDFPLPV RDGSATADHG LGSQVDSVAG PFQSVSVSSS
401: SGRTETGRSF GNGRVLEQLS FPPLQDQDIP DARMDAIPYE TSFPPVSEQQ SRYALALNQS SRGSARLGDE SLFPPLPGSS NKGSASTQQG LQSLAKNTLA
501: SRLQQRSKGT VKVLYSARSQ TAENPEIVPH VSTSTQTWPK PDQGLHLSGS SQLRIVTQST RDNGLMPSAS SGSAWNSRAS NKMKHSTSTP NFVSGGSSAQ
601: ASSSTAYGNK SQLPPQSSQP LPVVEDVQQA NKSLVERMRV ALGMDEDRFS AFKEIASEYR QGVIDTSEYL SYVEQFGISH LVPEMARLLP DPLKQMELAD
701: AYYTNMRFKS LQENGGCEGI TVKENKRKNK GKGKTPDAET VTAKDASESL ADSFIDTVRK LQSNNKTQGE AAVLSKDGYR SSKEKIPLSA GGSCSGTNLG
801: LDGDPVAISK ASGTSRYVGK GGGSSSSSSS DKQSKKTSKF LRARLGDNSL ATLDFSHPDV SPERPEKETQ VLQTGLPVRS VWKNGAAQKL FSSNEKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.