Factsheet for Bra004478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80080	Canola	nucleus	95.67	95.81
CDY37785	Canola	nucleus	88.04	94.09
GSMUA_Achr8P10850_001	Banana	cytosol	14.65	57.65
AT2G47090.1	Thale cress	nucleus	61.58	53.79
Bra003493.1-P	Field mustard	nucleus	50.97	42.36
Zm00001d048205_P003	Maize	nucleus	34.68	38.86
KRH68317	Soybean	nucleus	45.74	36.78
VIT_07s0005g02190.t01	Wine grape	nucleus	44.84	36.67
GSMUA_Achr5P20970_001	Banana	nucleus	38.71	36.43
KRG96582	Soybean	nucleus	44.84	36.01
Zm00001d048207_P001	Maize	nucleus	30.94	35.81
TraesCS3B01G201500.1	Wheat	nucleus	37.22	35.17
TraesCS3D01G176900.1	Wheat	nucleus	37.07	34.93
Solyc01g068390.2.1	Tomato	nucleus	45.74	34.81
Os05t0279400-01	Rice	plasma membrane	44.25	34.7
PGSC0003DMT400046261	Potato	nucleus	45.44	34.55
TraesCS1A01G139500.1	Wheat	nucleus	43.95	34.35
TraesCS1B01G154700.2	Wheat	nucleus	44.39	34.26
KXG39981	Sorghum	nucleus	42.15	33.77
HORVU1Hr1G032900.1	Barley	endoplasmic reticulum, mitochondrion, nucleus	43.95	32.78
Zm00001d028020_P001	Maize	nucleus	40.96	32.5
HORVU3Hr1G034270.3	Barley	nucleus, plastid	37.07	32.12
TraesCS3A01G164600.4	Wheat	nucleus	36.92	31.46
Os01t0251200-01	Rice	extracellular	33.48	30.39
TraesCS5A01G347000.1	Wheat	nucleus	38.86	24.16
TraesCS5B01G347900.1	Wheat	nucleus	38.86	23.99
TraesCS5D01G353400.1	Wheat	nucleus	38.56	23.06
OQU89392	Sorghum	cytosol, plasma membrane, vacuole	6.28	19.91
TraesCS2D01G161800.1	Wheat	cytosol	6.43	18.45
TraesCS2A01G156000.1	Wheat	cytosol	6.43	18.45
TraesCS2B01G181500.1	Wheat	cytosol	6.43	18.22
OQU89393	Sorghum	plasma membrane	5.83	16.53

Protein Annotations

EnsemblPlants:Bra004478.1	EnsemblPlants:Bra004478.1-P	EnsemblPlantsGene:Bra004478	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001841	InterPro:IPR013087	InterPro:Znf_C2H2_type	InterPro:Znf_RING	PANTHER:PTHR22938	PANTHER:PTHR22938:SF6
PFscan:PS50089	ScanProsite:PS00028	SEG:seg	SMART:SM00355	UniParc:UPI00025480CB	UniProt:M4CJU4
MapMan:15.5.15	:	:	:	:	:

Description

AT2G47090 (E=4e-083) | nucleic acid binding / protein binding / zinc ion binding

Coordinates

chrA05:+:343879..348819

Molecular Weight (calculated)

74281.0 Da

IEP (calculated)

8.929

GRAVY (calculated)

-0.757

Length

669 amino acids

Sequence
(BLAST)

001: MDDCCAVCAE NLEWVAYGFC GHREVCSTCV VRLRFILGDR RCCICKTDCP IVFVTKEFGD DTKTITDFST LPTEPKEGRV GSFWYHEETK VFFDDFNQYT
101: RIKSMCRLSC TSCVSNHRMR FKSVEHLKNH LNHQHKLHMC SLCLVGRKVF ICEQKLFTKE QLNQHISSGD SEVDGSESER GGFTGHPMCE FCKRPFYGGN
201: ELYTHMSREH YTCHICQRLR PGQYEYYGNY DDLEAHFRSD HFLCEDESCL AKKFIVFQTE PELKRHNTVD HGGRMSRSQQ SASLQASGFQ VQSRRGRRRS
301: SQAPYAIDDG YPLLQTMRSP GGSRLGESSF PPLSVQANRG VQTRFGQNSE SNNLRHEANR SAAARSSQTW PALIRGPTQA SVPSSIQSSS ASAQSQSRTL
401: ASAQASVGGC SSGSSLNPCN AKRNHHTSST AKTSDTRSLE QPSHPGSPPD SAVKSDNKSL VDKIRSSLGH DEELFKAFKD TSGKYRHGSI DARTYLEYVK
501: GYGLSHLVLD MARLCPDPKR QKELIDTYNA CLKSSSQTKE SCGLKKNKGK AVKVESSSDS MGFKLQFSDK SQDEDKVKVQ KDKGKAVVDT SSGGGVGLGG
601: NTGKQFKKTP KFLRARLGEK SMAANLRSSS NSTEPEGESK NDDSKSSQSS PGGLQLRGAW RRGSAKLFS

Best Arabidopsis Sequence Match ( AT2G47090.4 )
(BLAST)

001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHQTNR SATSGSSQAW
401: PALNRGPAEI SITSRVQSSG ASAQSQSRHH DRVESTRTLA SAVPQDARTT VGGCSSGSSL SSANATKRNN HHSSSTPKMS ETRSLAQPSH SDSPQISAVK
501: NRRSSSTSAN AGNIQVAQGV SDVQSDNKSL VEKIHASLGH DEELFMAFKN TSGKYRHGSI DARTYLEYVK GYGLSHLVLD MARLCPDPQR QKELIDTHNA
601: CLKGGNKGKA VKVESSSDSK GDRFVDTVRK LQFSDKSQDK DKDKDAYRSD KGKTKVTTLV NSSSAGVGLG DTGKQPKKTS KFLRTRLGEK SMAAVLDLRN
701: SNPEPEPEPK NDNSKRSQNS PGGLPLRGAW KRGSAKLFV

Arabidopsis Description

Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.