Factsheet for GSMUA_Achr8P10850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20970_001	Banana	nucleus	70.59	16.88
CDY37785	Canola	nucleus	58.24	15.81
CDX80080	Canola	nucleus	58.82	14.97
Bra003493.1-P	Field mustard	nucleus	70.59	14.91
Bra004478.1-P	Field mustard	nucleus	57.65	14.65
VIT_07s0005g02190.t01	Wine grape	nucleus	69.41	14.43
AT3G62240.1	Thale cress	nucleus	66.47	13.92
KRH68317	Soybean	nucleus	67.06	13.7
AT2G47090.1	Thale cress	nucleus	60.59	13.45
KRG96582	Soybean	nucleus	65.29	13.33
PGSC0003DMT400046261	Potato	nucleus	66.47	12.84
Solyc01g068390.2.1	Tomato	nucleus	64.71	12.51
GSMUA_Achr8P10840_001	Banana	extracellular, golgi	7.06	1.65

Protein Annotations

EnsemblPlants:GSMUA_Achr8P10850_001	EnsemblPlants:GSMUA_Achr8T10850_001	EnsemblPlantsGene:GSMUA_Achr8G10850_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22938	PANTHER:PTHR22938:SF6	PFAM:PF13920	PFscan:PS50089
UniParc:UPI000294926B	UniProt:M0TPD8	MapMan:15.5.15	:	:	:

Description

Putative LIM domain and RING finger protein YDR266C [Source:GMGC_GENE;Acc:GSMUA_Achr8G10850_001]

Coordinates

chr8:-:7770713..7772543

Molecular Weight (calculated)

19450.3 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.155

Length

170 amino acids

Sequence
(BLAST)

001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVLADR RCCICKTECS FVFVTKALGD YTRVVADFSV FPASPTEGQV GQYWFHEDTQ AFFDDVDHYR
101: MIKAMCRLSC SVCDKNAEVQ GGESAKRRIR FRSIEQLNGH LRHQHNLFMC NLCLEGRKSN PCSFIYIYEP

Best Arabidopsis Sequence Match ( AT3G62240.1 )
(BLAST)

001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS

Arabidopsis Description

At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.