Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g068390.2.1 | Tomato | nucleus | 95.57 | 95.68 |
| GSMUA_Achr8P10850_001 | Banana | cytosol | 12.84 | 66.47 |
| Bra003493.1-P | Field mustard | nucleus | 46.02 | 50.31 |
| AT3G62240.1 | Thale cress | nucleus | 46.36 | 50.25 |
| AT2G47090.1 | Thale cress | nucleus | 42.16 | 48.43 |
| Os05t0279400-01 | Rice | plasma membrane | 45.11 | 46.54 |
| KXG39981 | Sorghum | nucleus | 43.86 | 46.23 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 44.77 | 46.03 |
| CDY37785 | Canola | nucleus | 32.61 | 45.85 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 45.0 | 45.67 |
| Zm00001d048205_P003 | Maize | nucleus | 30.91 | 45.56 |
| CDX80080 | Canola | nucleus | 34.55 | 45.51 |
| Bra004478.1-P | Field mustard | nucleus | 34.55 | 45.44 |
| Zm00001d028020_P001 | Maize | nucleus | 43.41 | 45.31 |
| Zm00001d048207_P001 | Maize | nucleus | 29.09 | 44.29 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 35.45 | 43.88 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 44.43 | 43.59 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 35.0 | 43.5 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 35.0 | 43.38 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 34.77 | 38.98 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 33.52 | 38.21 |
| Os01t0251200-01 | Rice | extracellular | 29.89 | 35.69 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 38.41 | 31.41 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 37.84 | 30.72 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 38.07 | 29.94 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 4.2 | 17.54 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 4.55 | 17.17 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 4.55 | 17.17 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 4.55 | 16.95 |
| OQU89393 | Sorghum | plasma membrane | 4.32 | 16.1 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400046261 | EnsemblPlantsGene:PGSC0003DMG400017959 | EntrezGene:102586461 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001841 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400017959 | RefSeq:XP_006345360.1 | SEG:seg | SMART:SM00355 | UniParc:UPI000296459A |
| UniProt:M1BIV6 | MapMan:15.5.15 | : | : | : | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017959]
Coordinates
chr1:+:64065590..64070986
Molecular Weight (calculated)
97529.3 Da
IEP (calculated)
7.849
GRAVY (calculated)
-0.772
Length
880 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAE TLEWVAYGAC GHKDVCSTCV ARLRFICDDR RCCICKTEAD VVFVTKALGD YTNMIGDFSV FPSEPKEGKS GSYWYHEDTQ AFFDDLDHYK
101: MILAMCRLSC SVCDKMEGPD GDGVKRRARF RNIDQLKGHL FHKHKLHMCS LCLEGRKIFI CEQKLYTRAQ LNQHIHTGDS EVDGTESERG GFMGHPLCEF
201: CRTPFYGDNE LYSHMSTEHY TCHMCQRQHP GQYEYYKNYD DLEIHFRRDH FLCEDESCLA KKFIVFQSES ELKRHNTLEH GGRMSRSQRS AALQIPTSFR
301: YRRSSEQVNR RGRGQSFRRD NAESELSMAI QASLETANAD GRLHDTSSRR RVVSDQTVTD DDDLLVQPFD SLTTDSEPAS RYRQAVSQIS RNSQLEESSF
401: PPLAAPPGNS QPRPQSDAVP KNTMASHLRR KQNKSTKLPS SSPAWPATTG HSPPVIGHQP AWPVMSSASG SSSNSRHSKA VANKPSAPVI TREQAWPAVN
501: SAFGSASGSS QVKTSTAADE PPSSSYLNSV ASRSSLAHES SSSSVGSSRS WAHSNRISHS SSAPNLVQSG SFDSSTTDFP PVSAVQTRKL PASGQQAVTN
601: VEDVQTANKS LVERMHIALD FDQDKFTAFK DISAEYRQGL IDAETYLAYA AQFGLSHLVL ELARLCPDAE RQKALIDTYN ANFGGTVPIQ NRQSGVNRLK
701: DGKSSKNGKG KSIDAGSVTS KDNVADNILS TMRKLQSNHK IPEDDVEVLS RDGYRSAKGK SKLTLNEPEE ELNSRGKPLK LDARQNDLSA KDESNHMPGN
801: NDGKGKQRKK TSKFHRVRLG DGSVETLLNF NSSNPDLDPD PDRKETSDDQ SNPESLPVRG VWRNGGGQKL VAMTSKGPKK
101: MILAMCRLSC SVCDKMEGPD GDGVKRRARF RNIDQLKGHL FHKHKLHMCS LCLEGRKIFI CEQKLYTRAQ LNQHIHTGDS EVDGTESERG GFMGHPLCEF
201: CRTPFYGDNE LYSHMSTEHY TCHMCQRQHP GQYEYYKNYD DLEIHFRRDH FLCEDESCLA KKFIVFQSES ELKRHNTLEH GGRMSRSQRS AALQIPTSFR
301: YRRSSEQVNR RGRGQSFRRD NAESELSMAI QASLETANAD GRLHDTSSRR RVVSDQTVTD DDDLLVQPFD SLTTDSEPAS RYRQAVSQIS RNSQLEESSF
401: PPLAAPPGNS QPRPQSDAVP KNTMASHLRR KQNKSTKLPS SSPAWPATTG HSPPVIGHQP AWPVMSSASG SSSNSRHSKA VANKPSAPVI TREQAWPAVN
501: SAFGSASGSS QVKTSTAADE PPSSSYLNSV ASRSSLAHES SSSSVGSSRS WAHSNRISHS SSAPNLVQSG SFDSSTTDFP PVSAVQTRKL PASGQQAVTN
601: VEDVQTANKS LVERMHIALD FDQDKFTAFK DISAEYRQGL IDAETYLAYA AQFGLSHLVL ELARLCPDAE RQKALIDTYN ANFGGTVPIQ NRQSGVNRLK
701: DGKSSKNGKG KSIDAGSVTS KDNVADNILS TMRKLQSNHK IPEDDVEVLS RDGYRSAKGK SKLTLNEPEE ELNSRGKPLK LDARQNDLSA KDESNHMPGN
801: NDGKGKQRKK TSKFHRVRLG DGSVETLLNF NSSNPDLDPD PDRKETSDDQ SNPESLPVRG VWRNGGGQKL VAMTSKGPKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.