Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G139500.1 | Wheat | nucleus | 75.97 | 75.7 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 76.44 | 75.2 |
| KXG39981 | Sorghum | nucleus | 72.45 | 74.01 |
| Zm00001d028020_P001 | Maize | nucleus | 71.63 | 72.48 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 75.97 | 72.24 |
| Zm00001d048205_P003 | Maize | nucleus | 45.37 | 64.82 |
| Zm00001d048207_P001 | Maize | nucleus | 41.97 | 61.94 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 48.07 | 50.12 |
| KRH68317 | Soybean | nucleus | 46.31 | 47.48 |
| KRG96582 | Soybean | nucleus | 45.72 | 46.82 |
| Bra003493.1-P | Field mustard | nucleus | 43.38 | 45.96 |
| AT2G47090.1 | Thale cress | nucleus | 40.8 | 45.43 |
| CDY37785 | Canola | nucleus | 33.18 | 45.21 |
| PGSC0003DMT400046261 | Potato | nucleus | 46.54 | 45.11 |
| Solyc01g068390.2.1 | Tomato | nucleus | 46.42 | 45.05 |
| Os01t0251200-01 | Rice | extracellular | 38.69 | 44.78 |
| AT3G62240.1 | Thale cress | nucleus | 42.56 | 44.7 |
| CDX80080 | Canola | nucleus | 34.7 | 44.31 |
| Bra004478.1-P | Field mustard | nucleus | 34.7 | 44.25 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:4338285 | EMBL:AK102650 | ProteinID:APD13819.1 | ProteinID:BAF16998.1 | ProteinID:BAS93131.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | EnsemblPlantsGene:Os05g0279400 |
| EnsemblPlants:Os05t0279400-01 | ScanProsite:PS00028 | PFscan:PS50089 | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | UniProt:Q0DJH5 |
| SMART:SM00355 | UniParc:UPI0000E123ED | RefSeq:XP_015640037.1 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | SEG:seg |
Description
RING finger proteinZinc finger, RING-type domain containing protein. (Os05t0279400-01);Zinc finger, RING-type domain containing protein. (Os05t0279400-02)
Coordinates
chr5:+:11660556..11666374
Molecular Weight (calculated)
93948.9 Da
IEP (calculated)
8.346
GRAVY (calculated)
-0.742
Length
853 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAD ALEWVAYGAC GHREVCSTCV VRLRFVMGDK HCCICKTECS SVFVTKAMGD YTKVINDFNI FPPVATEGKV GEYWYHEDSQ AFFDDAEHYK
101: MIRAMCRLSC SVCDKAEDQA GQAAQVRRKS KFRSIEQLKG HLFHQHRLYM CSLCLEGRKV FICEQKLYTR TQLNQHVKTG DSEVDGSEVE RSGFAGHPMC
201: EFCRSSFYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLELHFRK DHFLCEDEAC LAKKFVVFQS EAELKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYRRNEQDE RRGRGRGRNS HRDGSDRDTP SMQNGSAIIG NGFPSRVDNV TGSVSVSSSS GRGESGQSSG NGRVFEHLSF PPLQDQDIPD ARMDSAPDET
401: SFPSLSEQQT RYAHALSQSS LAAKLGDELL FPPLPGSSSN RGSTSTQQGL QSLAKNTLAS RLQQRSKGSV KVLHSARPRP SENPESVPPV SSSPQMWPTP
501: DQGLLHSSSS QLRIVRENGI MSSADSAWNP GGGASNRMKH SVSTPNLMSG GSSVQALSTS NGGNKKQQPP QSSQTLPAAD DVRAANKTLV ERMRSALGMD
601: EDRYSAFKEI AGEYRQGIIG TSEYLSYVEQ FGLSHLVPEM ARLLPDPQKQ KELADAYHTN IRFRSLQENS DGLTITSKEG GRKKKGKGKS HDVTETSAAP
701: AKDMKDSLAD SFLDTVRKLQ LNKTQEGEAE VLSRDGYRSS KGKAQLITGG SSSSTPCLDG DHGAISMASC AKDDVGKGGG SSNSNINKQS KKTSKFLRAR
801: LGDNSLATLD LSRPTMSPER PERESQGPQV GLPMRGVWKN GGGQKLFTGN GRK
101: MIRAMCRLSC SVCDKAEDQA GQAAQVRRKS KFRSIEQLKG HLFHQHRLYM CSLCLEGRKV FICEQKLYTR TQLNQHVKTG DSEVDGSEVE RSGFAGHPMC
201: EFCRSSFYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLELHFRK DHFLCEDEAC LAKKFVVFQS EAELKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYRRNEQDE RRGRGRGRNS HRDGSDRDTP SMQNGSAIIG NGFPSRVDNV TGSVSVSSSS GRGESGQSSG NGRVFEHLSF PPLQDQDIPD ARMDSAPDET
401: SFPSLSEQQT RYAHALSQSS LAAKLGDELL FPPLPGSSSN RGSTSTQQGL QSLAKNTLAS RLQQRSKGSV KVLHSARPRP SENPESVPPV SSSPQMWPTP
501: DQGLLHSSSS QLRIVRENGI MSSADSAWNP GGGASNRMKH SVSTPNLMSG GSSVQALSTS NGGNKKQQPP QSSQTLPAAD DVRAANKTLV ERMRSALGMD
601: EDRYSAFKEI AGEYRQGIIG TSEYLSYVEQ FGLSHLVPEM ARLLPDPQKQ KELADAYHTN IRFRSLQENS DGLTITSKEG GRKKKGKGKS HDVTETSAAP
701: AKDMKDSLAD SFLDTVRKLQ LNKTQEGEAE VLSRDGYRSS KGKAQLITGG SSSSTPCLDG DHGAISMASC AKDDVGKGGG SSNSNINKQS KKTSKFLRAR
801: LGDNSLATLD LSRPTMSPER PERESQGPQV GLPMRGVWKN GGGQKLFTGN GRK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.