Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G154700.2 | Wheat | nucleus | 96.96 | 95.73 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 95.09 | 90.75 |
| Os05t0279400-01 | Rice | plasma membrane | 75.7 | 75.97 |
| KXG39981 | Sorghum | nucleus | 69.86 | 71.62 |
| Zm00001d028020_P001 | Maize | nucleus | 69.51 | 70.58 |
| Zm00001d048205_P003 | Maize | nucleus | 44.39 | 63.65 |
| Zm00001d048207_P001 | Maize | nucleus | 41.47 | 61.42 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 73.25 | 58.27 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 46.61 | 48.78 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 43.46 | 47.39 |
| KRH68317 | Soybean | nucleus | 45.56 | 46.88 |
| KRG96582 | Soybean | nucleus | 44.98 | 46.22 |
| Bra003493.1-P | Field mustard | nucleus | 42.17 | 44.84 |
| PGSC0003DMT400046261 | Potato | nucleus | 46.03 | 44.77 |
| Solyc01g068390.2.1 | Tomato | nucleus | 45.91 | 44.71 |
| AT2G47090.1 | Thale cress | nucleus | 39.72 | 44.39 |
| AT3G62240.1 | Thale cress | nucleus | 41.94 | 44.21 |
| Bra004478.1-P | Field mustard | nucleus | 34.35 | 43.95 |
| CDX80080 | Canola | nucleus | 34.11 | 43.71 |
| CDY37785 | Canola | nucleus | 31.78 | 43.45 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.26 | 19.31 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G139500.1 | EnsemblPlantsGene:TraesCS1A01G139500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | ncoils:Coil | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 |
| PFscan:PS50089 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr1A:+:236715923..236721117
Molecular Weight (calculated)
94660.8 Da
IEP (calculated)
8.203
GRAVY (calculated)
-0.672
Length
856 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVLEDS LCCICKTDCP SVFVTKAMGD YTKVISDFSV LPTEANEGNV GEYWYHEDTK AYFDDADHYK
101: MIRAMCRLSC SVCDKAEDQV GQAAQAKRRS RFKSIDQLKG HLFHQHRLYM CNLCLEGRKV FICEQKLYTR AQLAQHTKTG DSEVDGSEIE RSGFAGHPVC
201: EFCKYPLYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLEMHFRK DHFLCEDDAC LAKKFVVFQS DAEIKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYQRNEQDQ RRGRGRGRNA HHDRPDRDFS LPVRDGSATA DHGLGSRVDS VAGPFQSLSV SSSSGRTETG RSLGNGRLLE QLSFPPLQDQ DIPDARMDAV
401: PYGTSFPPVS EQQSRYALAL NQSSRGSARL GDESLFPPLP GSSNKGSAST QQGLQSLAKN TLASRLQQRS KGTVKVLYSA QSQTAENPEI VPHVSTSTQT
501: WPTPEQGLHL SGSSQLWIVT QSTRENGLMP SASSGSAWNS RASNKMKHSI STPNFVSGGS SAQASSTAYG NKKQLPPQSS QPLPVVEDVR QANKSLVERM
601: RVALGMDEDR FSAFKEIASE YRQGVIDTSE YLSYVEQFGI SHLVPEMAKL LPDPLKQMEL ADAYYTNMRF RSLQENDGCG TITVKENKRR NKGKGKTPDA
701: ETAPAKDASE SLADSFMDTV RKLQLNNKAQ EGEAAVLSKD GYRSSKEKIP LSAGGSSCGT NMGLDGDPVA ISKASGTSRY VGKGSSSSNN KQSKKTSKFL
801: RARLGDNSLA TLDFSHPDVS PERPVRETQV LQTGLPVRSV WKNGAAQKLF SSNGKK
101: MIRAMCRLSC SVCDKAEDQV GQAAQAKRRS RFKSIDQLKG HLFHQHRLYM CNLCLEGRKV FICEQKLYTR AQLAQHTKTG DSEVDGSEIE RSGFAGHPVC
201: EFCKYPLYGD NELYTHMSRE HYSCHICQRQ HPGQYDYFRN YDDLEMHFRK DHFLCEDDAC LAKKFVVFQS DAEIKRHNAM EHGGRMSRAQ RNAALQIPTS
301: FIYQRNEQDQ RRGRGRGRNA HHDRPDRDFS LPVRDGSATA DHGLGSRVDS VAGPFQSLSV SSSSGRTETG RSLGNGRLLE QLSFPPLQDQ DIPDARMDAV
401: PYGTSFPPVS EQQSRYALAL NQSSRGSARL GDESLFPPLP GSSNKGSAST QQGLQSLAKN TLASRLQQRS KGTVKVLYSA QSQTAENPEI VPHVSTSTQT
501: WPTPEQGLHL SGSSQLWIVT QSTRENGLMP SASSGSAWNS RASNKMKHSI STPNFVSGGS SAQASSTAYG NKKQLPPQSS QPLPVVEDVR QANKSLVERM
601: RVALGMDEDR FSAFKEIASE YRQGVIDTSE YLSYVEQFGI SHLVPEMAKL LPDPLKQMEL ADAYYTNMRF RSLQENDGCG TITVKENKRR NKGKGKTPDA
701: ETAPAKDASE SLADSFMDTV RKLQLNNKAQ EGEAAVLSKD GYRSSKEKIP LSAGGSSCGT NMGLDGDPVA ISKASGTSRY VGKGSSSSNN KQSKKTSKFL
801: RARLGDNSLA TLDFSHPDVS PERPVRETQV LQTGLPVRSV WKNGAAQKLF SSNGKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.