Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G347900.1 | Wheat | nucleus | 93.49 | 92.8 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 94.8 | 91.15 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 58.27 | 73.25 |
| KXG39981 | Sorghum | nucleus | 47.58 | 61.32 |
| Zm00001d028020_P001 | Maize | nucleus | 47.58 | 60.74 |
| Zm00001d048205_P003 | Maize | nucleus | 32.62 | 58.79 |
| Zm00001d048207_P001 | Maize | nucleus | 30.2 | 56.23 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 32.71 | 43.03 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 31.32 | 42.93 |
| KRH68317 | Soybean | nucleus | 31.88 | 41.23 |
| KRG96582 | Soybean | nucleus | 31.13 | 40.22 |
| AT2G47090.1 | Thale cress | nucleus | 28.16 | 39.56 |
| Bra003493.1-P | Field mustard | nucleus | 29.46 | 39.38 |
| AT3G62240.1 | Thale cress | nucleus | 29.37 | 38.92 |
| Bra004478.1-P | Field mustard | nucleus | 24.16 | 38.86 |
| CDY37785 | Canola | nucleus | 22.58 | 38.82 |
| CDX80080 | Canola | nucleus | 24.07 | 38.77 |
| Solyc01g068390.2.1 | Tomato | nucleus | 31.51 | 38.57 |
| PGSC0003DMT400046261 | Potato | nucleus | 31.41 | 38.41 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 4.37 | 20.17 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G347000.1 | EnsemblPlantsGene:TraesCS5A01G347000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5A:+:549352781..549356011
Molecular Weight (calculated)
116925.0 Da
IEP (calculated)
8.304
GRAVY (calculated)
-0.675
Length
1076 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDSCAVCAD ALEWVAYGPC GHREVCSTCV VRLRFVVGDR HCCICKTDCP SVFVTKAMGD YTRVISDFSA LPAAASEGKA GEYWYHEDSR AYFDDADHYK
0101: MIRAMCRLSC SVCERIEEGQ AAQAKGRDST FKTIGLLRGH LSDKHGLRMC KLCLEGRKVF ICQQKLYTQE QMARHTQTGD TEVDGSEVER GGFAGHPICE
0201: YCKRAFYGDN ELYAHMTRDH YSCHICQRRH PGQYDYFRNY NDLEMHFRKD HFLCEDDACL AKKFVVFQSD AEINRHNAME HGGRMSRAQR NAALQIPTSF
0301: MYQRNEQDQR RGRGRGRSAH HDRPDGDFSL PVDGSATADH GLGSRLDSAG GSTMLADESL FPPLPGSSNK CSASTQQGLQ GLPKTTLASR LQQSRKGTVK
0401: VLYSGRPQTA QNPEIVPHAS TSTHTCPTPE RERNGSATAE HGLGSRVDSV AGPLQSSSVS SASSRRRSLG NGRVLEQLSF PHLQGRDIPD ARMDAVSDET
0501: SFAPLSEHQS SNTLALNQSS RGSERLGDVF LPLPGSSNKG SASTRHGLKP FAKNTLASRL EQPRKGTVKV LNSGRPQTAE NPEIVPHVST STQTCPTPEQ
0601: ERDGTATAEH HGLGSLVDSV AGPLQSSSVN SASSGQSLGN GGVLEQLSFP PPGDQDIPDA RMDAVPEKTL FPPLSEHQPK HALAVNQSSR GSAKHQAKHA
0701: PAVNQSSRDS ARLGDESLFP PLPGLSNKGS ASTQQGLQSL AKNTFASRLQ QPRKGAMNSC RSQTTENPEI VPDFSTSTEA WPTPDQGLHL SGSSHLRTVP
0801: QSTRDNGLVP PASSGSAWNS RAPIKMKHSV STPNLVSGGS STQASSSTAY GNKHQVSPQS SQPLPLAEDV RQANNALMEK MRAAFGMDED RFSAFKEIAS
0901: EYRHGVIGTS EYLSYVEQFG ISHLVPEMAI LLPDPLKQTE LAEAYYANMR SKSLKENGSF ETITLKEKLL QEGEAAVLSK DGYRSSKERT PLSAGGDQVA
1001: ISKASSTSRY VGKGGGSSSS NNNSKQSKKT SKFLRARLGD NSLAMLDFRH PDDVSPERNV WKKGVAQKLF SGNAKK
0101: MIRAMCRLSC SVCERIEEGQ AAQAKGRDST FKTIGLLRGH LSDKHGLRMC KLCLEGRKVF ICQQKLYTQE QMARHTQTGD TEVDGSEVER GGFAGHPICE
0201: YCKRAFYGDN ELYAHMTRDH YSCHICQRRH PGQYDYFRNY NDLEMHFRKD HFLCEDDACL AKKFVVFQSD AEINRHNAME HGGRMSRAQR NAALQIPTSF
0301: MYQRNEQDQR RGRGRGRSAH HDRPDGDFSL PVDGSATADH GLGSRLDSAG GSTMLADESL FPPLPGSSNK CSASTQQGLQ GLPKTTLASR LQQSRKGTVK
0401: VLYSGRPQTA QNPEIVPHAS TSTHTCPTPE RERNGSATAE HGLGSRVDSV AGPLQSSSVS SASSRRRSLG NGRVLEQLSF PHLQGRDIPD ARMDAVSDET
0501: SFAPLSEHQS SNTLALNQSS RGSERLGDVF LPLPGSSNKG SASTRHGLKP FAKNTLASRL EQPRKGTVKV LNSGRPQTAE NPEIVPHVST STQTCPTPEQ
0601: ERDGTATAEH HGLGSLVDSV AGPLQSSSVN SASSGQSLGN GGVLEQLSFP PPGDQDIPDA RMDAVPEKTL FPPLSEHQPK HALAVNQSSR GSAKHQAKHA
0701: PAVNQSSRDS ARLGDESLFP PLPGLSNKGS ASTQQGLQSL AKNTFASRLQ QPRKGAMNSC RSQTTENPEI VPDFSTSTEA WPTPDQGLHL SGSSHLRTVP
0801: QSTRDNGLVP PASSGSAWNS RAPIKMKHSV STPNLVSGGS STQASSSTAY GNKHQVSPQS SQPLPLAEDV RQANNALMEK MRAAFGMDED RFSAFKEIAS
0901: EYRHGVIGTS EYLSYVEQFG ISHLVPEMAI LLPDPLKQTE LAEAYYANMR SKSLKENGSF ETITLKEKLL QEGEAAVLSK DGYRSSKERT PLSAGGDQVA
1001: ISKASSTSRY VGKGGGSSSS NNNSKQSKKT SKFLRARLGD NSLAMLDFRH PDDVSPERNV WKKGVAQKLF SGNAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.