Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96582 | Soybean | nucleus | 93.51 | 93.4 |
| GSMUA_Achr8P10850_001 | Banana | cytosol | 13.7 | 67.06 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 61.66 | 62.71 |
| Bra003493.1-P | Field mustard | nucleus | 48.56 | 50.19 |
| AT3G62240.1 | Thale cress | nucleus | 48.92 | 50.12 |
| Zm00001d048205_P003 | Maize | nucleus | 35.1 | 48.91 |
| AT2G47090.1 | Thale cress | nucleus | 44.11 | 47.91 |
| Zm00001d048207_P001 | Maize | nucleus | 32.81 | 47.23 |
| KXG39981 | Sorghum | nucleus | 46.75 | 46.59 |
| Os05t0279400-01 | Rice | plasma membrane | 47.48 | 46.31 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 39.54 | 46.27 |
| Zm00001d028020_P001 | Maize | nucleus | 46.51 | 45.91 |
| Bra004478.1-P | Field mustard | nucleus | 36.78 | 45.74 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 46.88 | 45.56 |
| CDY37785 | Canola | nucleus | 34.25 | 45.53 |
| CDX80080 | Canola | nucleus | 36.54 | 45.51 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 47.0 | 45.1 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 46.27 | 42.92 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 36.06 | 42.37 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 35.94 | 42.11 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 35.7 | 37.83 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 34.86 | 37.56 |
| Os01t0251200-01 | Rice | extracellular | 32.09 | 36.23 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 41.23 | 31.88 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 40.87 | 31.37 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 41.47 | 30.83 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 4.93 | 19.43 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 5.41 | 19.31 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 5.41 | 19.31 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 5.29 | 18.64 |
| OQU89393 | Sorghum | plasma membrane | 4.93 | 17.37 |
Protein Annotations
| EMBL:ACUP02002106 | EnsemblPlants:KRH68317 | EnsemblPlantsGene:GLYMA_03G222900 | EntrezGene:100799878 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR001841 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 |
| PANTHER:PTHR22938:SF6 | PFscan:PS50089 | ProteinID:KRH68317 | ProteinID:KRH68317.1 | SEG:seg | SMART:SM00355 |
| UniParc:UPI00023374B3 | UniProt:I1JQV7 | MapMan:15.5.15 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:42570807..42575416
Molecular Weight (calculated)
92369.8 Da
IEP (calculated)
7.806
GRAVY (calculated)
-0.727
Length
832 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDCCAVCAE PLEWVAYGPC LHREVCSTCV ARLRFICDDR RCCICKTECN LVFVTKALGD YTRMINDFST LPLEAREGKV GSYWYHEDTN AFFDDVDHYR
101: MIKAMCRLSC NVCDKIEDQP QDAASRRRAK FRNIGQLKGH LFHRHKLHMC NLCLEGRKVF ICEQKLYTKA QLNQHVISGD SEVDGSESER GGFMGHPMCE
201: FCRTPFYGDN ELYMHMSTEH YTCHICQRQH PGQYEYYKNY DDLEIHFRQE HFLCEDEACL AKKFVVFQSE AEMKRHNAIE HGGRMSRSKR NAALQIPTSF
301: RYRHGNEHEQ RRGRGRTFRR DTENQLSMAI EASLETANAE QTFLDQSTSS SGQVAVDDGN DDIDALIQPF ESLAAGSEAS ARYLQALGHS SRNGPLEDSS
401: FPPLPIISSN GQQRSKHELE GSSSNTMAAR LRRHGNRTVS VINSGNAWPA AGRGLVQSSS NPSQSKLSTN NVLGLSRNTG QMKTVINSGP SSSTYAGSIQ
501: ATQRTAHGQF PAGSSRNTRD NVRIVHSASA PNLMENNSVE VSISDFPPVS AAQVSKLPAS SQSSLNVENV QSANKSLVEK IRGALDFDEE RYSIFKDISA
601: QYRQGTIDTG TYLDYVQQFG LSHLVLELAR LCPDTHKQKE LVEAYNASLQ RDAFPEINLV RGSTSTHSKD SNVNKKGKGK SVDSRGSNSR EKLANNFLST
701: VHQLQANYKS SEEKAEVLSR GDYRSEGGKL KIEQRIDMNS GSQPTMKLGG KTETSNDSLS NQSKDDGGGG NKQRKKTSKF LRVRLGDGSV SALLDQSDPG
801: TTDGSEGNKD DSGGGPPVRG VWRKGGGNKL FS
101: MIKAMCRLSC NVCDKIEDQP QDAASRRRAK FRNIGQLKGH LFHRHKLHMC NLCLEGRKVF ICEQKLYTKA QLNQHVISGD SEVDGSESER GGFMGHPMCE
201: FCRTPFYGDN ELYMHMSTEH YTCHICQRQH PGQYEYYKNY DDLEIHFRQE HFLCEDEACL AKKFVVFQSE AEMKRHNAIE HGGRMSRSKR NAALQIPTSF
301: RYRHGNEHEQ RRGRGRTFRR DTENQLSMAI EASLETANAE QTFLDQSTSS SGQVAVDDGN DDIDALIQPF ESLAAGSEAS ARYLQALGHS SRNGPLEDSS
401: FPPLPIISSN GQQRSKHELE GSSSNTMAAR LRRHGNRTVS VINSGNAWPA AGRGLVQSSS NPSQSKLSTN NVLGLSRNTG QMKTVINSGP SSSTYAGSIQ
501: ATQRTAHGQF PAGSSRNTRD NVRIVHSASA PNLMENNSVE VSISDFPPVS AAQVSKLPAS SQSSLNVENV QSANKSLVEK IRGALDFDEE RYSIFKDISA
601: QYRQGTIDTG TYLDYVQQFG LSHLVLELAR LCPDTHKQKE LVEAYNASLQ RDAFPEINLV RGSTSTHSKD SNVNKKGKGK SVDSRGSNSR EKLANNFLST
701: VHQLQANYKS SEEKAEVLSR GDYRSEGGKL KIEQRIDMNS GSQPTMKLGG KTETSNDSLS NQSKDDGGGG NKQRKKTSKF LRVRLGDGSV SALLDQSDPG
801: TTDGSEGNKD DSGGGPPVRG VWRKGGGNKL FS
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.