Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G201500.1 | Wheat | nucleus | 97.32 | 97.6 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 98.03 | 88.66 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 83.1 | 76.42 |
| Os01t0251200-01 | Rice | extracellular | 51.69 | 49.8 |
| Zm00001d048205_P003 | Maize | nucleus | 40.7 | 48.41 |
| Zm00001d048207_P001 | Maize | nucleus | 37.61 | 46.19 |
| KXG39981 | Sorghum | nucleus | 51.55 | 43.83 |
| Zm00001d028020_P001 | Maize | nucleus | 50.7 | 42.7 |
| CDY37785 | Canola | nucleus | 34.79 | 39.46 |
| VIT_07s0005g02190.t01 | Wine grape | nucleus | 42.96 | 37.29 |
| Bra004478.1-P | Field mustard | nucleus | 34.93 | 37.07 |
| CDX80080 | Canola | nucleus | 34.79 | 36.98 |
| AT2G47090.1 | Thale cress | nucleus | 39.15 | 36.29 |
| KRH68317 | Soybean | nucleus | 42.11 | 35.94 |
| KRG96582 | Soybean | nucleus | 41.69 | 35.53 |
| Solyc01g068390.2.1 | Tomato | nucleus | 43.38 | 35.04 |
| PGSC0003DMT400046261 | Potato | nucleus | 43.38 | 35.0 |
| AT3G62240.1 | Thale cress | nucleus | 39.72 | 34.73 |
| Bra003493.1-P | Field mustard | nucleus | 39.15 | 34.53 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 48.31 | 30.65 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 5.77 | 17.6 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G176900.1 | EnsemblPlantsGene:TraesCS3D01G176900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF7 | PFscan:PS50089 |
| SEG:seg | SMART:SM00355 | TIGR:cd16615 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3D:+:158079566..158084149
Molecular Weight (calculated)
78309.2 Da
IEP (calculated)
8.650
GRAVY (calculated)
-0.658
Length
710 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDACAVCAE RLEWVAYGAC GHREVCSACV TRLRFVLRDQ RCCLCMTHCP AVFATKEMGD RTKAIGDLSA LPSAAGEGKT GEYWYHEATQ VWFDDADHYR
101: MVRAMCRISC TVCESSGNKG KKGSKSSKAK HKIKFETIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCKSPF YGETELDTHL TREHYSCHIC QRQHGGQDDY FRNYDDLEMH FRRDHFFCED RECLEKKFIV FQSEAELKRH NAVEHRKRMP HAQKNSALQT
301: PTSSRDRSEL EQSNGRGRRH NACLSNGSVD NTLLSVQNSI ANMGRGSGNQ VAAVVSPLRS SSGHSSQAGQ SSGMNLVWQQ PHFPPLSRQE VPDARIGSCF
401: QEAPSPPISG QSGYTPVASR SSRTAARAMD LEFPPLSGSN NRTAASTEQG VRKVAENTHA FGLRQQSNGI VNTHHSAQHW SLQNTGLIPS GSSHSPSWPT
501: PNTSPHVSGS LSLTSAGNGG QETPLSRQVL CSVDDVRAAN NSLVERMQAA LGMDRDRYSM FKEISGEYRQ GVINASKYLS YVEQFGLSHL VLEMSRLLPD
601: PQKQKELADA YYANLRLTSL QGNGGGGAVC SKESTRKNKG KGKLPAAAQD SLEDKLLSAA SKLQSQVGGS RALLREGCGA ADGPLQEPRW PVKGAWQNRG
701: GQRLVSKAKK
101: MVRAMCRISC TVCESSGNKG KKGSKSSKAK HKIKFETIEQ LKAHLSNKHC LYMCDLCLDG RKVFICEQKL YTRPQLNQHI KTGDSEVDGS EVERRGFAGH
201: PMCKFCKSPF YGETELDTHL TREHYSCHIC QRQHGGQDDY FRNYDDLEMH FRRDHFFCED RECLEKKFIV FQSEAELKRH NAVEHRKRMP HAQKNSALQT
301: PTSSRDRSEL EQSNGRGRRH NACLSNGSVD NTLLSVQNSI ANMGRGSGNQ VAAVVSPLRS SSGHSSQAGQ SSGMNLVWQQ PHFPPLSRQE VPDARIGSCF
401: QEAPSPPISG QSGYTPVASR SSRTAARAMD LEFPPLSGSN NRTAASTEQG VRKVAENTHA FGLRQQSNGI VNTHHSAQHW SLQNTGLIPS GSSHSPSWPT
501: PNTSPHVSGS LSLTSAGNGG QETPLSRQVL CSVDDVRAAN NSLVERMQAA LGMDRDRYSM FKEISGEYRQ GVINASKYLS YVEQFGLSHL VLEMSRLLPD
601: PQKQKELADA YYANLRLTSL QGNGGGGAVC SKESTRKNKG KGKLPAAAQD SLEDKLLSAA SKLQSQVGGS RALLREGCGA ADGPLQEPRW PVKGAWQNRG
701: GQRLVSKAKK
001: MDDSCAVCAE NLEWVGYGSC GHREVCSTCV VRLRFILNDR RCCICKTECP VVFVTKALGD YTKTISDFST TFPSVPKEGR VGSFWYHEET NVYFDDLNHY
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
101: TRIKAMCRLS CNLCNDTNKT RPKKEPNHCV RFKSVEHLKD HLNHQHKLHM CSLCLVGRKV FICEQKLFTK GQLNQHISSG DSEVDGSESE RGGFTGHPMC
201: EFCKRPFYGD NELYTHMSRE HYTCHICQRL KPGQYEYYGN YDDLEVHFRS DHFLCEDETC LAKKFIVFQI EAELKRHNAI DHGGRMSRSQ QNASLQIQAS
301: FQYPNSRRGR RRSSLREPNL VLLESQASYA FNDDNNLPQH VGRSGNSRLG ESSFPPLSVQ ANQGQSRFGQ NSESLVSNTT TTRQRHRANQ GQSRFGQNSE
401: SLVSNTTTTR QRHQTNRSAT SGSSQAWPAL NRGPAEISIT SRVQSSGASA QSQSRHHDRV ESTRTLASAV PQDARTTVGG CSSGSSLSSA NATKRNNHHS
501: SSTPKMSETR SLAQPSHSDS PQISAVKNRR SSSTSANAGN IQVAQGVSDV QSDNKSLVEK IHASLGHDEE LFMAFKNTSG KYRHGSIDAR TYLEYVKGYG
601: LSHLVLDMAR LCPDPQRQKE LIDTHNACLK GGNKGKAVKV ESSSDSKGDR FVDTVRKLQF SDKSQDKDKD KDAYRSDKGK TKVTTLVNSS SAGVGLGDTG
701: KQPKKTSKFL RTRLGEKSMA AVLDLRNSNP EPEPEPKNDN SKRSQNSPGG LPLRGAWKRG SAKLFV
Arabidopsis Description
Zinc ion binding/nucleic acid binding protein [Source:UniProtKB/TrEMBL;Acc:F4IK69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.