Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046261 | Potato | nucleus | 95.68 | 95.57 |
| GSMUA_Achr8P10850_001 | Banana | cytosol | 12.51 | 64.71 |
| AT3G62240.1 | Thale cress | nucleus | 46.64 | 50.49 |
| Bra003493.1-P | Field mustard | nucleus | 46.19 | 50.43 |
| AT2G47090.1 | Thale cress | nucleus | 42.21 | 48.43 |
| Os05t0279400-01 | Rice | plasma membrane | 45.05 | 46.42 |
| CDY37785 | Canola | nucleus | 32.76 | 46.01 |
| TraesCS1A01G139500.1 | Wheat | nucleus | 44.71 | 45.91 |
| KXG39981 | Sorghum | nucleus | 43.46 | 45.75 |
| Bra004478.1-P | Field mustard | nucleus | 34.81 | 45.74 |
| CDX80080 | Canola | nucleus | 34.7 | 45.66 |
| TraesCS1B01G154700.2 | Wheat | nucleus | 44.94 | 45.56 |
| Zm00001d048205_P003 | Maize | nucleus | 30.72 | 45.23 |
| Zm00001d028020_P001 | Maize | nucleus | 43.12 | 44.96 |
| Zm00001d048207_P001 | Maize | nucleus | 28.78 | 43.77 |
| TraesCS3B01G201500.1 | Wheat | nucleus | 35.15 | 43.64 |
| GSMUA_Achr5P20970_001 | Banana | nucleus | 35.27 | 43.6 |
| HORVU1Hr1G032900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus | 44.48 | 43.59 |
| TraesCS3D01G176900.1 | Wheat | nucleus | 35.04 | 43.38 |
| TraesCS3A01G164600.4 | Wheat | nucleus | 34.93 | 39.11 |
| HORVU3Hr1G034270.3 | Barley | nucleus, plastid | 33.56 | 38.21 |
| Os01t0251200-01 | Rice | extracellular | 29.47 | 35.14 |
| TraesCS5A01G347000.1 | Wheat | nucleus | 38.57 | 31.51 |
| TraesCS5B01G347900.1 | Wheat | nucleus | 38.0 | 30.81 |
| TraesCS5D01G353400.1 | Wheat | nucleus | 38.23 | 30.03 |
| TraesCS2D01G161800.1 | Wheat | cytosol | 4.66 | 17.6 |
| TraesCS2A01G156000.1 | Wheat | cytosol | 4.66 | 17.6 |
| OQU89392 | Sorghum | cytosol, plasma membrane, vacuole | 4.21 | 17.54 |
| TraesCS2B01G181500.1 | Wheat | cytosol | 4.66 | 17.37 |
| OQU89393 | Sorghum | plasma membrane | 4.21 | 15.68 |
Protein Annotations
| EnsemblPlants:Solyc01g068390.2.1 | EnsemblPlantsGene:Solyc01g068390.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001841 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | PANTHER:PTHR22938 | PANTHER:PTHR22938:SF6 | PFscan:PS50089 |
| SEG:seg | SMART:SM00355 | UniParc:UPI000276356C | UniProt:K4AX85 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr1:-:77600346..77605628
Molecular Weight (calculated)
96937.9 Da
IEP (calculated)
8.021
GRAVY (calculated)
-0.711
Length
879 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSCAVCAE TLEWVAYGAC GHKDVCSTCV ARLRFICDDR RCCICKTEAD VVFVTKALGD YTNMIGDFSV FPFEPKQGKS GSYWYHEDTQ AFFDDFDHYK
101: MILAMCRLSC SVCDKMEGPD VDGVKRRARF KNIDQLKGHL FHKHKLHMCS LCLEGRKIFI CEQKLYTRAQ LNQHIHTGDS EVDGTESERG GFMGHPLCEF
201: CRTPFYGDNE LYSHMSTEHY TCHMCQRQHP GQYEYYKNYD DLEIHFRRDH FLCEDGSCLA KKFIVFQSEA ELKRHNTLEH GGRMSRSQRS AALQIPTSFR
301: YRRSSEQVNR RGRGQSFRRD NAESELSMAI QASLETANAD GRLHDTSGSR RVVPDQTVTD DADLLVQPFD SLTTDSEPAS RYLQAVSQIS RNSQLEESSF
401: PPLAAPPVNS QPRPQSDAPM NTMASHLRRK QNKSTKLPNS SPAWPATTGH SPPVIGHQPA WPVISSASGS SSNSRHSKAV VNKPSAPVIT RGQAWPAVNS
501: AFGSASGSTQ VKTLTAADGP PSSSHLNSVA SRSSLAHESS SSSVGSSRSW AHSNRISHSS SAPNLVQSGS FDSSTTDFPP VSAAQSGKLP ASGQQAVTNV
601: EDVQTANKSL VERMHIALDF DQDKFTAFKD ISAEYRQGLI DAETYLAYAA QFGLSHLVLE LARLCPDAER QKALIDTYNA NLGGTVPIQN RQSGINRLKD
701: GRSSKNGKGK SIDAGSVTSK DIVADNILST VRKLQSSHKI PEDDVEVLSR DGYRSAKGKS KLTPNESEEE LNSRGKPLKL DARQNDLSAK DESNHRPGNN
801: DGKGKQRKKT SKFHRVRLGD GSVETLLNLN SSNPDLDPNP DQKETSDDQG NPESLPVRGV WRNGGGQKLV AMTSKGPKK
101: MILAMCRLSC SVCDKMEGPD VDGVKRRARF KNIDQLKGHL FHKHKLHMCS LCLEGRKIFI CEQKLYTRAQ LNQHIHTGDS EVDGTESERG GFMGHPLCEF
201: CRTPFYGDNE LYSHMSTEHY TCHMCQRQHP GQYEYYKNYD DLEIHFRRDH FLCEDGSCLA KKFIVFQSEA ELKRHNTLEH GGRMSRSQRS AALQIPTSFR
301: YRRSSEQVNR RGRGQSFRRD NAESELSMAI QASLETANAD GRLHDTSGSR RVVPDQTVTD DADLLVQPFD SLTTDSEPAS RYLQAVSQIS RNSQLEESSF
401: PPLAAPPVNS QPRPQSDAPM NTMASHLRRK QNKSTKLPNS SPAWPATTGH SPPVIGHQPA WPVISSASGS SSNSRHSKAV VNKPSAPVIT RGQAWPAVNS
501: AFGSASGSTQ VKTLTAADGP PSSSHLNSVA SRSSLAHESS SSSVGSSRSW AHSNRISHSS SAPNLVQSGS FDSSTTDFPP VSAAQSGKLP ASGQQAVTNV
601: EDVQTANKSL VERMHIALDF DQDKFTAFKD ISAEYRQGLI DAETYLAYAA QFGLSHLVLE LARLCPDAER QKALIDTYNA NLGGTVPIQN RQSGINRLKD
701: GRSSKNGKGK SIDAGSVTSK DIVADNILST VRKLQSSHKI PEDDVEVLSR DGYRSAKGKS KLTPNESEEE LNSRGKPLKL DARQNDLSAK DESNHRPGNN
801: DGKGKQRKKT SKFHRVRLGD GSVETLLNLN SSNPDLDPNP DQKETSDDQG NPESLPVRGV WRNGGGQKLV AMTSKGPKK
001: MDDSCAVCAD NLEWVAYGSC GHREVCSTCV VRLRFVLDDP RCCICKTESP IVFVTKALGD YTRTINDFST FPSAPREGRV GAFWYHEDTQ AFFDDLDQYR
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
101: MIKAMCRLSC GVCDKTEDKP REGGPRHHRQ RIKSVEQLKG HLYHKHKLHM CGLCLEGRKI FICEQKLYTR AQLNQHIQTG DSEVDGSESE RGGFAGHPMC
201: EFCRNPFYGD NELYTHMSTE HYTCHLCQRS QPGQYEYYKN YDDLEIHFRR DHFLCEDDSC LAKKFTVFQN ESELKRHNAI EHGGKMSRSQ RSAALQIPTS
301: FRYSRGNDQE NRRGRPRSFR REPGDEEYNL AVHAALRLSE SEYSRQEPAP PPSSAPPGFS ENNNIHVDDT DPLIQPMESL STTDMEPSSR YLQAVGSFGG
401: GGSRLGESAF PPLSGQQSSG QNVESLPTNT MAARLRRQTN RTSTASAIAS PSQGWPVINR GPGQASITSG GNHSSSGWPA IGRTPVQASS SSVQSRSHNR
501: VSQPRPLASA VPQAARNANR IPHSSSAPNL SDTRSLQPSH SDFPPVSSAV VQNRKTSSTT TQGSSNTQPP PDVQSANKSL IEKMRSALGH DEDVFVAFRN
601: ISGQYRQGSI DAKTYLEYVQ GYGLSHLVID LARLCPDPKR QKELIDTHNA SLREEDSKDN GRSAAQSSSQ PKESQSSKKN KGKAVKVVDP KETLADNFMD
701: TVRRLQSSQN PQEEEEEAIS KDKNTYRSDK GKSQVVGTDS SSTGSKQQRK KTSKFHRVRL GDGSMAALLD LNNSTRESEQ ESKDSNSNSN QNQTGGLPVR
801: GVWRKGGANL FS
Arabidopsis Description
At3g62240 [Source:UniProtKB/TrEMBL;Acc:Q9M1Q0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.