Factsheet for AT2G27960.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25124	Soybean	cytosol	96.55	95.45
KRH30550	Soybean	cytosol	96.55	95.45
VIT_06s0061g00810.t01	Wine grape	cytosol	93.1	92.05
PGSC0003DMT400001218	Potato	cytosol	91.95	90.91
PGSC0003DMT400048460	Potato	cytosol	90.8	89.77
Zm00001d048394_P001	Maize	nucleus	88.51	88.51
AT2G27970.1	Thale cress	nucleus	82.76	86.75
KXG40187	Sorghum	nucleus	86.21	86.21
GSMUA_Achr2P11710_001	Banana	nucleus	91.95	86.02
Os03t0146300-01	Rice	nucleus	87.36	84.44
TraesCS4A01G410900.1	Wheat	nucleus	87.36	84.44
TraesCS4B01G311000.1	Wheat	nucleus	87.36	84.44
TraesCS4D01G308900.1	Wheat	nucleus	87.36	84.44
Zm00001d027655_P001	Maize	cytosol	80.46	67.31
GSMUA_Achr2P11750_001	Banana	cytosol	91.95	60.15
HORVU4Hr1G079310.1	Barley	cytosol, mitochondrion, nucleus, plastid	88.51	57.46
Zm00001d015611_P002	Maize	plastid	72.41	35.2

Protein Annotations

MapMan:13.1.1.2.8	Gene3D:3.30.170.10	EntrezGene:817340	UniProt:A0A178VPG9	ProteinID:AAD21506.1	ProteinID:AEC08064.1
EMBL:AJ000016	EMBL:AK175719	EMBL:AK175828	EMBL:AK176119	ArrayExpress:AT2G27960	EnsemblPlantsGene:AT2G27960
RefSeq:AT2G27960	TAIR:AT2G27960	RefSeq:AT2G27960-TAIR-G	EnsemblPlants:AT2G27960.1	TAIR:AT2G27960.1	EMBL:AY088339
EMBL:BT024528	Symbol:CKS1	InterPro:Cyclin-dep_kinase_reg-sub	InterPro:Cyclin-dep_kinase_reg-sub_sf	GO:GO:0000278	GO:GO:0000307
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464	GO:GO:0007049	GO:GO:0007346
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019005
GO:GO:0019538	GO:GO:0019901	GO:GO:0030234	GO:GO:0042023	GO:GO:0042393	GO:GO:0043130
GO:GO:0045737	GO:GO:0045859	GO:GO:0045893	GO:GO:0051301	GO:GO:0051726	GO:GO:0061575
InterPro:IPR036858	RefSeq:NP_180363.1	UniProt:O23249	ProteinID:OAP08360.1	PFAM:PF01111	PO:PO:0000013
PO:PO:0000017	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0020144
PO:PO:0025022	PO:PO:0025275	PO:PO:0025281	PRINTS:PR00296	ScanProsite:PS00944	PANTHER:PTHR23415
PANTHER:PTHR23415:SF29	SMART:SM01084	SUPFAM:SSF55637	UniParc:UPI0000030529	SEG:seg	:

Description

CKS1Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A178VPG9]

Coordinates

chr2:-:11910569..11911802

Molecular Weight (calculated)

10521.6 Da

IEP (calculated)

9.465

GRAVY (calculated)

-0.822

Length

87 amino acids

Sequence
(BLAST)

1: MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAVHRP EPHIMLFRRP LNYQQQQENQ AQNMLVK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.