Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0251200-01 | |
| Os01t0847600-01 | |
| Os01t0847700-01 | |
| Os01t0847800-02 | |
| Os01t0848200-02 | |
| Os01t0897000-01 | |
| Os01t0900800-01 | |
| Os01t0972900-01 | endoplasmic reticulum, endoplasmic reticulum |
| Os01t0973000-01 | endoplasmic reticulum, endoplasmic reticulum |
| Os02t0123100-01 | |
| Os02t0139600-01 | |
| Os02t0603600-01 | |
| Os02t0686400-01 | |
| Os03t0137800-01 | nucleus, nucleus, nucleus, nucleus |
| Os03t0203800-01 | nucleus, nucleus |
| Os03t0306400-01 | |
| Os03t0617500-01 | nucleus, nucleus |
| Os04t0382100-01 | |
| Os04t0443300-00 | |
| Os04t0489600-02 | |
| Os05t0279400-01 | |
| Os05t0455500-02 | |
| Os05t0456200-00 | |
| Os05t0456300-01 | |
| Os07t0143700-01 | |
| Os07t0556000-01 | nucleus, nucleus |
| Os07t0689300-01 | |
| Os08t0512600-01 | |
| Os09t0111100-01 | nucleus |
| Os10t0471700-02 | nucleus, nucleus, nucleus, nucleus |
| Os11t0143500-01 | |
| Os12t0139600-01 | |
| Os12t0588800-01 | nucleus, nucleus |
| Os12t0611200-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G308900.1 | Wheat | nucleus | 92.22 | 92.22 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 92.22 | 92.22 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 92.22 | 92.22 |
| Zm00001d048394_P001 | Maize | nucleus | 86.67 | 89.66 |
| KRH30550 | Soybean | cytosol | 86.67 | 88.64 |
| KRH25124 | Soybean | cytosol | 86.67 | 88.64 |
| KXG40187 | Sorghum | nucleus | 85.56 | 88.51 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 85.56 | 87.5 |
| AT2G27960.1 | Thale cress | cytosol | 84.44 | 87.36 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 90.0 | 87.1 |
| AT2G27970.1 | Thale cress | nucleus | 80.0 | 86.75 |
| PGSC0003DMT400001218 | Potato | cytosol | 84.44 | 86.36 |
| PGSC0003DMT400048460 | Potato | cytosol | 83.33 | 85.23 |
| CDY30517 | Canola | cytosol | 72.22 | 80.25 |
| CDX77145 | Canola | cytosol | 72.22 | 80.25 |
| Bra034380.1-P | Field mustard | cytosol | 72.22 | 80.25 |
| Zm00001d027655_P001 | Maize | cytosol | 80.0 | 69.23 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 91.11 | 61.19 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 90.0 | 60.9 |
| Zm00001d015611_P002 | Maize | plastid | 71.11 | 35.75 |
Protein Annotations
| MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | EntrezGene:4331610 | ProteinID:AAK98736.1 | ProteinID:ABF93962.1 | EMBL:AK121395 |
| EMBL:AY583319 | ProteinID:BAF10871.1 | ProteinID:BAS82279.1 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | ProteinID:EAZ25575.1 |
| GO:GO:0000307 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007346 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0019005 | GO:GO:0019538 |
| GO:GO:0019901 | GO:GO:0030234 | GO:GO:0042393 | GO:GO:0043130 | GO:GO:0045737 | GO:GO:0045859 |
| GO:GO:0045893 | GO:GO:0051301 | GO:GO:0061575 | InterPro:IPR036858 | EnsemblPlantsGene:Os03g0146300 | EnsemblPlants:Os03t0146300-01 |
| PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | UniProt:Q6PS57 |
| SMART:SM01084 | SUPFAM:SSF55637 | UniParc:UPI00000A168D | RefSeq:XP_015628990.1 | SEG:seg | : |
Description
CDK subunit protein 1Similar to Cyclin-dependent kinases regulatory subunit. (Os03t0146300-01)
Coordinates
chr3:+:2571794..2572787
Molecular Weight (calculated)
10603.7 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.619
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MGQIQYSEKY FDDTYEYRHV VLPPEVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNFQQQQEAA AAAAAQMLPK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.