Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0123100-01 | |
| Os03t0146300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G37630.1 | Os03t0146300-01 | AT2G27960.1 | 20706207 |
| AT4G37630.1 | Os03t0146300-01 | AT2G27970.1 | 20706207 |
| AT4G37630.1 | Os02t0123100-01 | AT3G48750.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G080600.1 | Wheat | nucleus | 73.42 | 76.14 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 73.42 | 76.14 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 73.15 | 76.07 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 71.51 | 74.79 |
| Zm00001d041345_P001 | Maize | cytosol | 70.14 | 73.35 |
| EES17294 | Sorghum | nucleus | 72.88 | 73.28 |
| Zm00001d030894_P002 | Maize | nucleus | 67.95 | 71.88 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 55.62 | 53.99 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 34.79 | 39.69 |
| GSMUA_Achr10P... | Banana | nucleus | 29.86 | 38.11 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 30.96 | 35.65 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 26.85 | 35.25 |
| KRH61407 | Soybean | nucleus | 29.32 | 34.29 |
| KRH52092 | Soybean | nucleus | 29.04 | 33.76 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 28.22 | 32.39 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 28.49 | 31.52 |
| Os03t0203800-01 | Rice | nucleus | 29.59 | 31.3 |
| AT4G37630.1 | Thale cress | nucleus | 26.3 | 29.72 |
| KRH28363 | Soybean | nucleus | 26.58 | 29.31 |
| Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 19.73 | 29.27 |
| KRH77118 | Soybean | nucleus | 26.3 | 28.92 |
| CDY29570 | Canola | nucleus | 26.3 | 28.74 |
| CDX72643 | Canola | nucleus | 26.58 | 28.53 |
| Bra017840.1-P | Field mustard | nucleus | 26.58 | 28.45 |
| Os09t0111100-01 | Rice | cytosol | 26.3 | 26.37 |
| Os09t0382300-00 | Rice | nucleus | 22.19 | 26.3 |
| Os09t0466100-01 | Rice | nucleus | 24.93 | 25.56 |
| Os08t0479300-01 | Rice | nucleus | 25.48 | 24.28 |
| Os07t0620800-01 | Rice | nucleus | 23.56 | 24.16 |
| Os07t0556000-01 | Rice | cytosol | 19.18 | 21.88 |
| Os06t0236600-00 | Rice | nucleus | 20.82 | 20.94 |
| Os11t0706801-00 | Rice | nucleus | 17.26 | 19.69 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:4352668 | ProteinID:ABA99754.1 | EMBL:AK101602 | ProteinID:BAF30181.1 |
| ProteinID:BAT17864.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051301 | EnsemblPlantsGene:Os12g0588800 | EnsemblPlants:Os12t0588800-01 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF225 | UniProt:Q2QMW1 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0000680D17 |
| RefSeq:XP_015619001.1 | SEG:seg | : | : | : | : |
Description
CYCLIN-D5-1Cyclin D domain containing protein. (Os12t0588800-01)
Coordinates
chr12:-:24619889..24622059
Molecular Weight (calculated)
39408.0 Da
IEP (calculated)
4.425
GRAVY (calculated)
-0.152
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEEAEECS AACGFSLTCQ EDGADLGDGV VDDDDDGDVF LFYNAVAAAD DEEEEEEYVE QMVSKEASFC CSSSSSLFDA AAGDGYGDGD GDGDWFRQAR
101: LAAVKWILET RGYFGFGHRT AYLAIAYFDR FCLRRRVDRE AMPWAARLLS IACVSVAAKM EEYQSPALSE FDAGGGRVFC SDSIRRMELL VLSTLGWRMG
201: AVTPFDFLPC FSSRLHRHHH GGAGAAGHGA AAAARVALNA VGFIFATAEA GSVLDYRPST VAAAAILAAS YGAPLTKEAL ESKMSNLSPS CLIDKENVHA
301: CYSMMVGDMN NNRRSSKRPL QCSDSNEITT TSTYDSVLVD DVTDTAAFAA TAMNKRLRPE PPRIR
101: LAAVKWILET RGYFGFGHRT AYLAIAYFDR FCLRRRVDRE AMPWAARLLS IACVSVAAKM EEYQSPALSE FDAGGGRVFC SDSIRRMELL VLSTLGWRMG
201: AVTPFDFLPC FSSRLHRHHH GGAGAAGHGA AAAARVALNA VGFIFATAEA GSVLDYRPST VAAAAILAAS YGAPLTKEAL ESKMSNLSPS CLIDKENVHA
301: CYSMMVGDMN NNRRSSKRPL QCSDSNEITT TSTYDSVLVD DVTDTAAFAA TAMNKRLRPE PPRIR
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.