Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0897000-01 | |
| Os02t0123100-01 | |
| Os08t0512600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70210.1 | Os08t0512600-01 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | Os02t0123100-01 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | Os01t0897000-01 | AT3G54180.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G200500.2 | Wheat | nucleus | 75.0 | 71.3 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 74.03 | 71.25 |
| OQU89443 | Sorghum | nucleus | 72.08 | 66.67 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 74.03 | 63.87 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 74.35 | 62.4 |
| Zm00001d020353_P001 | Maize | nucleus | 62.34 | 58.01 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 48.05 | 50.0 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 48.05 | 45.68 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 43.83 | 44.55 |
| KRH69476 | Soybean | nucleus | 49.03 | 44.54 |
| CDY38800 | Canola | nucleus | 45.13 | 43.57 |
| Bra007901.1-P | Field mustard | nucleus | 47.73 | 43.36 |
| AT1G70210.1 | Thale cress | nucleus | 47.73 | 43.36 |
| CDY67142 | Canola | nucleus | 47.73 | 43.36 |
| CDY11608 | Canola | nucleus | 44.48 | 43.22 |
| Solyc05g006050.2.1 | Tomato | nucleus | 46.43 | 42.43 |
| PGSC0003DMT400040287 | Potato | nucleus | 46.1 | 42.26 |
| KRG99255 | Soybean | nucleus | 47.73 | 42.24 |
| CDY59943 | Canola | nucleus | 49.03 | 41.83 |
| KRH45743 | Soybean | nucleus | 47.73 | 40.83 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 50.97 | 40.36 |
| KRH74675 | Soybean | nucleus, plastid | 48.38 | 39.01 |
| Os06t0236600-00 | Rice | nucleus | 45.45 | 38.57 |
| Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 26.62 | 33.33 |
| Os09t0466100-01 | Rice | nucleus | 37.66 | 32.58 |
| Os08t0479300-01 | Rice | nucleus | 37.01 | 29.77 |
| Os07t0620800-01 | Rice | nucleus | 34.09 | 29.49 |
| Os07t0556000-01 | Rice | cytosol | 28.57 | 27.5 |
| Os11t0706801-00 | Rice | nucleus | 24.35 | 23.44 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 28.57 | 23.4 |
| Os09t0111100-01 | Rice | cytosol | 27.27 | 23.08 |
| Os03t0203800-01 | Rice | nucleus | 25.32 | 22.61 |
| Os12t0588800-01 | Rice | nucleus | 26.3 | 22.19 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | ProteinID:BAD25836.1 | ProteinID:BAF24977.2 | ProteinID:BAT07863.1 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os09g0382300 |
| EnsemblPlants:Os09t0382300-00 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF206 | UniProt:Q0J233 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000150AF4F |
| SEG:seg | : | : | : | : | : |
Description
CYCLIN-D1-1Cyclin-D2-1. (Os09t0382300-00)
Coordinates
chr9:-:12969034..12971764
Molecular Weight (calculated)
33554.8 Da
IEP (calculated)
4.192
GRAVY (calculated)
0.059
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MPADDDDASY LLCAEDAGAA VFDVAVDIST CTTEDDECCS VGGEELYSAA SIAELIGGEA EYSPRSDYPD RLRSRSIDPA ARAESVSWIL KVQEYNGFLP
101: LTAYLAVNYM DRFLSLRHLP EGQGWAMQLL AVACLSLAAK MEETLVPSLL DLQVECSRYV FEPRTICRME FLILTALNWR LRSVTPFTFI DFFACKHISN
201: AMVQNANSDI QFLDHCPSSM AAAAVLCATG ETPSLAFVNP ELAVNWCIGL AEEGISSCYQ LMQQLVIGNV QRSAAAAAAV NLFSDEGLSY DSSSPPPPKR
301: RKRSPPGT
101: LTAYLAVNYM DRFLSLRHLP EGQGWAMQLL AVACLSLAAK MEETLVPSLL DLQVECSRYV FEPRTICRME FLILTALNWR LRSVTPFTFI DFFACKHISN
201: AMVQNANSDI QFLDHCPSSM AAAAVLCATG ETPSLAFVNP ELAVNWCIGL AEEGISSCYQ LMQQLVIGNV QRSAAAAAAV NLFSDEGLSY DSSSPPPPKR
301: RKRSPPGT
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.