Factsheet for Os07t0556000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0897000-01
Os02t0123100-01
Os03t0137800-01
Os03t0146300-01
Os08t0538700-01
Os10t0471700-02
Os11t0533500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	Os03t0146300-01	AT2G27960.1	20706207
AT4G03270.1	Os03t0137800-01	AT2G32710.1	20706207
AT4G03270.1	Os10t0471700-02	AT2G32710.1	20706207
AT4G03270.1	Os08t0538700-01	AT3G12280.1	22921914
AT4G03270.1	Os11t0533500-01	AT3G12280.1	22921914
AT4G03270.1	Os02t0123100-01	AT3G48750.1	20706207
AT4G03270.1	Os01t0897000-01	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	76.88	78.59
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	75.94	78.39
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	60.0	76.49
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	72.5	75.57
EER99528	Sorghum	cytosol	72.5	73.89
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	76.25	71.55
HORVU7Hr1G117300.3	Barley	cytosol	30.94	60.0
GSMUA_Achr6P24270_001	Banana	nucleus	42.81	45.07
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	40.31	43.0
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	31.25	39.84
VIT_12s0134g00500.t01	Wine grape	nucleus	36.56	39.8
KRH10729	Soybean	nucleus	30.0	35.29
KRH21593	Soybean	nucleus	29.69	34.93
Bra034198.1-P	Field mustard	nucleus	32.19	34.56
CDY22116	Canola	nucleus	32.19	34.56
Solyc02g079370.2.1	Tomato	nucleus	31.56	34.01
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	31.88	34.0
KRH26876	Soybean	nucleus	33.44	33.97
KRH22479	Soybean	cytosol	33.44	33.86
VIT_00s0203g00160.t01	Wine grape	cytosol	33.44	33.86
CDY21951	Canola	nucleus	31.88	33.77
GSMUA_Achr9P12120_001	Banana	nucleus	42.81	32.46
PGSC0003DMT400039033	Potato	nucleus	31.25	32.15
AT4G03270.1	Thale cress	nucleus	30.31	32.12
Solyc07g054950.1.1	Tomato	nucleus	30.62	31.61
CDX90892	Canola	nucleus	14.69	30.92
PGSC0003DMT400012934	Potato	nucleus	28.75	30.36
KRH25470	Soybean	nucleus	30.62	30.25
KRH56054	Soybean	cytosol, nucleus, plasma membrane	30.62	29.79
Solyc03g006670.2.1	Tomato	nucleus	28.44	29.26
Os09t0382300-00	Rice	nucleus	27.5	28.57
Os07t0620800-01	Rice	nucleus	26.56	23.88
Os09t0466100-01	Rice	nucleus	25.62	23.03
Os08t0479300-01	Rice	nucleus	27.5	22.98
Os03t0392000-00	Rice	cytosol, nucleus, plastid	17.19	22.36
Os06t0236600-00	Rice	nucleus	23.75	20.94
Os11t0706801-00	Rice	nucleus	19.69	19.69
Os09t0111100-01	Rice	cytosol	22.19	19.51
Os12t0588800-01	Rice	nucleus	21.88	19.18
Os03t0617500-01	Rice	cytosol, nucleus	21.56	18.35
Os03t0203800-01	Rice	nucleus	17.81	16.52

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:4343569	EMBL:AK121938	ProteinID:BAD30903.1	ProteinID:BAF21875.1
ProteinID:BAT02101.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N
ProteinID:EEE67394.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0051301	GO:GO:0051726	EnsemblPlantsGene:Os07g0556000	EnsemblPlants:Os07t0556000-01
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF240	UniProt:Q69S43
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI00003FE7FE	RefSeq:XP_015645356.1	SEG:seg	:

Description

CYCLIN-D6-1Cyclin D domain containing protein. (Os07t0556000-01)

Coordinates

chr7:-:22169522..22171723

Molecular Weight (calculated)

34173.7 Da

IEP (calculated)

5.429

GRAVY (calculated)

-0.008

Length

320 amino acids

Sequence
(BLAST)

001: MDMATGAKEV VVVEAYEYEF DLENPFTSPA DEPIASLLDA EGHHSPSVSA AASAARREAA GFISKVRYDG ELDVHPRVAY LALNYVDRYL SKRQLACERN
101: PWAPRLLAIS CLTLAAKMQR AAAISAADIQ RGEEFMFDEA KIQRMEQMVL NALEWRTRSV TPLAFLGFFL SACFPQPRHP ALLDAIKARA VDLLLRVQPE
201: VKMAEFSPSV AAAAALLAAA GEVAGAHLLG FEAGVAACPF VNSEKLRECG EVMAAACGVG PSWAAAATSA ETPVTVLGHH RSASSESERT TTVGSAANSA
301: DAKRRCMGPP RQWGVGGPDE

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.