Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039033 | Potato | nucleus | 89.35 | 89.07 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 53.55 | 56.46 |
| KRH22479 | Soybean | cytosol | 50.0 | 49.05 |
| KRH26876 | Soybean | nucleus | 49.03 | 48.25 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 50.65 | 47.72 |
| KRH25470 | Soybean | nucleus | 49.68 | 47.53 |
| AT4G03270.1 | Thale cress | nucleus | 44.19 | 45.36 |
| CDY21951 | Canola | nucleus | 43.23 | 44.37 |
| Bra034198.1-P | Field mustard | nucleus | 41.61 | 43.29 |
| CDY22116 | Canola | nucleus | 41.61 | 43.29 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 41.61 | 42.43 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 39.68 | 41.0 |
| CDX90892 | Canola | nucleus | 20.0 | 40.79 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 32.58 | 40.24 |
| Solyc02g079370.2.1 | Tomato | nucleus | 38.06 | 39.73 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 28.06 | 35.95 |
| Solyc03g006670.2.1 | Tomato | nucleus | 34.19 | 34.08 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 32.58 | 32.9 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 26.13 | 32.27 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 32.26 | 31.95 |
| EER99528 | Sorghum | cytosol | 32.26 | 31.85 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 31.61 | 31.61 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 41.94 | 30.81 |
| Os07t0556000-01 | Rice | cytosol | 31.61 | 30.62 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 31.94 | 29.03 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 14.52 | 27.27 |
| Solyc04g076040.2.1 | Tomato | nucleus | 30.32 | 26.48 |
| Solyc12g087900.1.1 | Tomato | nucleus | 25.48 | 25.0 |
| Solyc05g006050.2.1 | Tomato | nucleus | 27.1 | 24.93 |
| Solyc05g051410.2.1 | Tomato | nucleus | 26.13 | 23.55 |
| Solyc11g010460.1.1 | Tomato | cytosol | 23.23 | 23.08 |
| Solyc12g088650.1.1 | Tomato | nucleus | 23.23 | 22.15 |
| Solyc04g078470.2.1 | Tomato | nucleus | 23.23 | 21.43 |
| Solyc01g107730.2.1 | Tomato | nucleus | 25.16 | 21.43 |
| Solyc02g092980.2.1 | Tomato | nucleus | 23.55 | 20.33 |
| Solyc02g064900.1.1 | Tomato | nucleus | 21.61 | 19.36 |
| Solyc02g064910.1.1 | Tomato | nucleus | 13.23 | 17.45 |
| Solyc02g064860.1.1 | Tomato | nucleus | 12.9 | 17.02 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_D_plant |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | UniProt:K4CG35 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF188 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| EnsemblPlantsGene:Solyc07g054950.1 | EnsemblPlants:Solyc07g054950.1.1 | UniParc:UPI000276C80C | SEG:seg | : | : |
Description
Putative cyclin-D6-1 [Source:Projected from Arabidopsis thaliana (AT4G03270) UniProtKB/Swiss-Prot;Acc:Q9ZR04]
Coordinates
chr7:-:63101891..63103671
Molecular Weight (calculated)
35526.7 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.002
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDLENPLP FSHDETHFDT ISPLFNIEAH HMPSKTYFQI LINSNFLINI REATISKILQ ISQPFDSHFL PYLAINYLDR FLSFHSLSDA KPWILNLIGV
101: SCVSLAFKMK KTEYSVTDIQ QDAGSIFDIE TIKRMELLIL GSLKWRMRSI TAFAFINFFI SSFKFKDLPF QQALKARATE IIFTSQNEIK ILQFKPSTIS
201: ASALLCASHE LFPLQFSCYK TAIINCSYVH KDDLLSCCNV IQEITKKEYE SILEIVSSTS TPVNVLDVQM SWSSDNEPIE EDSSVNAISS RQDNLTKRRK
301: IITTIIDDNT
101: SCVSLAFKMK KTEYSVTDIQ QDAGSIFDIE TIKRMELLIL GSLKWRMRSI TAFAFINFFI SSFKFKDLPF QQALKARATE IIFTSQNEIK ILQFKPSTIS
201: ASALLCASHE LFPLQFSCYK TAIINCSYVH KDDLLSCCNV IQEITKKEYE SILEIVSSTS TPVNVLDVQM SWSSDNEPIE EDSSVNAISS RQDNLTKRRK
301: IITTIIDDNT
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.