Factsheet for Solyc05g051410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1
Solyc02g090680.2.1
Solyc08g066330.1.1
Solyc09g061280.2.1
Solyc09g091780.2.1
Solyc12g098310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	Solyc09g091780.2.1	AT2G32710.1	20706207
AT5G10440.1	Solyc12g098310.1.1	AT2G32710.1	20706207
AT5G10440.1	Solyc01g108610.2.1	AT3G19150.1	20706207
AT5G10440.1	Solyc02g090680.2.1	AT3G19150.1	20706207
AT5G10440.1	Solyc09g061280.2.1	AT3G24810.1	20706207
AT5G10440.1	Solyc08g066330.1.1	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037827	Potato	nucleus	95.93	95.93
Solyc11g010460.1.1	Tomato	cytosol	63.08	69.55
KRH74510	Soybean	nucleus	55.81	53.19
Bra038518.1-P	Field mustard	nucleus	44.77	53.1
CDY13755	Canola	nucleus	44.77	52.74
VIT_00s0199g00210.t01	Wine grape	nucleus	53.78	52.41
KRH45568	Soybean	nucleus	52.33	52.02
KRH69654	Soybean	cytosol	35.76	50.62
KRG99448	Soybean	nucleus	52.62	50.56
CDX81286	Canola	nucleus	38.95	50.38
CDY54717	Canola	nucleus	38.95	50.38
AT5G65420.3	Thale cress	nucleus	44.77	48.43
Bra037817.1-P	Field mustard	nucleus	39.53	48.23
Bra024383.1-P	Field mustard	nucleus	42.73	47.73
CDY08795	Canola	nucleus	42.44	47.4
GSMUA_Achr6P02210_001	Banana	plastid	34.3	47.39
CDX69832	Canola	nucleus	40.7	47.14
Bra009031.1-P	Field mustard	nucleus	40.41	46.8
Bra031858.1-P	Field mustard	nucleus	40.41	46.49
Bra030232.1-P	Field mustard	nucleus	47.97	46.48
CDX97009	Canola	nucleus	39.53	46.42
GSMUA_Achr3P06730_001	Banana	nucleus	46.8	46.4
CDY25602	Canola	nucleus	47.97	46.35
AT5G10440.1	Thale cress	nucleus	40.12	46.31
Solyc04g076040.2.1	Tomato	nucleus	47.67	46.2
CDX89480	Canola	nucleus	47.67	46.2
AT2G22490.2	Thale cress	nucleus	48.55	46.13
GSMUA_Achr8P23430_001	Banana	nucleus	46.51	46.11
CDX76917	Canola	nucleus	47.38	46.05
CDY33959	Canola	nucleus	40.41	45.57
GSMUA_Achr9P15070_001	Banana	nucleus	45.93	45.14
CDY37828	Canola	nucleus	40.41	44.98
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	46.8	44.97
CDY14561	Canola	cytosol	42.44	44.92
GSMUA_Achr10P...	Banana	nucleus	41.86	44.86
GSMUA_Achr10P...	Banana	nucleus	44.48	44.48
GSMUA_Achr5P17920_001	Banana	nucleus	44.48	44.22
TraesCS6B01G345300.1	Wheat	plastid	44.19	43.06
HORVU6Hr1G077500.1	Barley	nucleus	43.9	43.02
GSMUA_Achr5P22980_001	Banana	nucleus	43.6	42.98
TraesCS6A01G314900.1	Wheat	nucleus	43.31	41.62
Solyc12g087900.1.1	Tomato	nucleus	37.79	41.14
GSMUA_Achr7P12850_001	Banana	nucleus	42.44	40.44
Zm00001d018128_P001	Maize	nucleus	40.12	38.87
Zm00001d052185_P001	Maize	nucleus	40.41	38.61
EES07560	Sorghum	nucleus	39.53	37.99
KXG19603	Sorghum	nucleus	36.63	36.21
TraesCS6D01G294200.1	Wheat	nucleus	25.29	34.52
Solyc02g092980.2.1	Tomato	nucleus	32.56	31.2
Solyc05g006050.2.1	Tomato	nucleus	30.23	30.86
Solyc12g088650.1.1	Tomato	nucleus	28.49	30.15
Solyc02g064900.1.1	Tomato	nucleus	29.07	28.9
Solyc01g107730.2.1	Tomato	nucleus	29.36	27.75
Solyc04g078470.2.1	Tomato	nucleus	27.03	27.68
Solyc02g064910.1.1	Tomato	nucleus	18.31	26.81
Solyc02g064860.1.1	Tomato	nucleus	18.02	26.38
Solyc07g054950.1.1	Tomato	nucleus	23.55	26.13
Solyc02g079370.2.1	Tomato	nucleus	21.22	24.58
Solyc03g006670.2.1	Tomato	nucleus	20.06	22.19

Protein Annotations

EnsemblPlants:Solyc05g051410.2.1	EnsemblPlantsGene:Solyc05g051410.2	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF337	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	SEG:seg	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00027656E7	UniProt:K4C1H2	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr5:+:61712740..61715142

Molecular Weight (calculated)

38853.2 Da

IEP (calculated)

5.553

GRAVY (calculated)

-0.074

Length

344 amino acids

Sequence
(BLAST)

001: MDENKDLLCT ETESFDFDDL GSLGIGQKKN EINNKDLIFG KNGSRSEVLI DLPKISEESF SFMVKREIDF LPKDDYLKRL RSGDLDLSVR REAIDWIWKA
101: CMHFGYGKLN FCLSINYLDR FLSLYELPRG KTWAVQLLAV ACLSIAVKME EIHVPLIVDL QVGNPKFVFE GKTIQRMELL VLTTLKWRML AYTPCTFIDY
201: FVRKMNDDQI PSERLISKAI QLILCSIRGI DFLEFRSSEI AAAVAISVSK EMQANDIDKA MPCFIHVQKG RVMKCLELIQ DLTLVSGTVT TATTITTTAS
301: VPKSPNGVLE AACLSYKSDE SIVGSQTSPE NKRRKLDTSL QEGT

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.