Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37828 | Canola | nucleus | 97.38 | 96.12 |
| CDY54717 | Canola | nucleus | 68.2 | 78.2 |
| CDX81286 | Canola | nucleus | 66.56 | 76.32 |
| CDY08795 | Canola | nucleus | 74.1 | 73.38 |
| AT5G65420.3 | Thale cress | nucleus | 75.41 | 72.33 |
| CDY14561 | Canola | cytosol | 75.74 | 71.08 |
| CDX69832 | Canola | nucleus | 57.05 | 58.59 |
| CDX97009 | Canola | nucleus | 55.08 | 57.34 |
| Solyc11g010460.1.1 | Tomato | cytosol | 45.57 | 44.55 |
| KRH69654 | Soybean | cytosol | 34.1 | 42.8 |
| PGSC0003DMT400037827 | Potato | nucleus | 46.23 | 40.99 |
| Solyc05g051410.2.1 | Tomato | nucleus | 45.57 | 40.41 |
| CDY13755 | Canola | nucleus | 38.36 | 40.07 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 32.46 | 39.76 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 45.57 | 39.38 |
| KRH74510 | Soybean | nucleus | 46.23 | 39.06 |
| CDY25602 | Canola | nucleus | 44.59 | 38.2 |
| CDX89480 | Canola | nucleus | 44.26 | 38.03 |
| GSMUA_Achr10P... | Banana | nucleus | 40.0 | 38.01 |
| TraesCS6B01G345300.1 | Wheat | plastid | 43.93 | 37.96 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 43.28 | 37.61 |
| KRH45568 | Soybean | nucleus | 42.62 | 37.57 |
| PGSC0003DMT400041637 | Potato | nucleus | 48.52 | 37.56 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 42.62 | 37.46 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 43.93 | 37.43 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 42.3 | 36.86 |
| CDX76917 | Canola | nucleus | 42.62 | 36.72 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 41.64 | 36.71 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 41.64 | 36.6 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 42.95 | 36.59 |
| GSMUA_Achr10P... | Banana | nucleus | 40.98 | 36.34 |
| KRG99448 | Soybean | nucleus | 42.62 | 36.31 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 40.98 | 35.82 |
| Zm00001d018128_P001 | Maize | nucleus | 40.98 | 35.21 |
| Zm00001d052185_P001 | Maize | nucleus | 41.31 | 35.0 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 40.66 | 34.35 |
| EES07560 | Sorghum | nucleus | 39.67 | 33.8 |
| KXG19603 | Sorghum | nucleus | 38.03 | 33.33 |
| CDY11608 | Canola | nucleus | 31.48 | 30.28 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 24.26 | 29.37 |
| CDY38800 | Canola | nucleus | 30.49 | 29.15 |
| CDY67142 | Canola | nucleus | 31.8 | 28.61 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 15.74 | 27.91 |
| CDY59943 | Canola | nucleus | 31.48 | 26.59 |
| CDY22116 | Canola | nucleus | 24.59 | 25.17 |
| CDX83112 | Canola | nucleus | 28.52 | 24.72 |
| CDY21951 | Canola | nucleus | 24.26 | 24.5 |
| CDX68573 | Canola | nucleus | 28.2 | 24.43 |
| CDY02095 | Canola | nucleus | 26.23 | 24.39 |
| CDY23022 | Canola | nucleus | 25.9 | 24.01 |
| CDY17742 | Canola | nucleus | 27.87 | 23.94 |
| CDY30607 | Canola | nucleus | 27.54 | 23.8 |
| CDX76265 | Canola | nucleus | 27.87 | 23.29 |
| CDY57741 | Canola | nucleus | 27.54 | 23.01 |
| CDY49278 | Canola | nucleus | 27.21 | 22.49 |
| CDY69708 | Canola | nucleus | 27.54 | 22.46 |
| CDY12825 | Canola | nucleus | 26.23 | 22.35 |
| CDX75405 | Canola | nucleus | 27.21 | 22.25 |
| CDX72453 | Canola | nucleus | 26.23 | 22.22 |
| CDY01425 | Canola | nucleus | 24.92 | 21.47 |
| CDX90892 | Canola | nucleus | 9.84 | 19.74 |
| CDY29570 | Canola | nucleus | 21.31 | 19.46 |
| CDX72643 | Canola | nucleus | 21.31 | 19.12 |
| CDY10467 | Canola | cytosol | 20.0 | 17.99 |
| CDY40332 | Canola | cytosol | 20.0 | 17.94 |
| CDY55121 | Canola | cytosol | 18.36 | 16.33 |
| CDX80803 | Canola | cytosol | 18.69 | 12.64 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078H8Y1 | UniProt:A0A078H8Y1 | EnsemblPlants:CDY33959 | ProteinID:CDY33959 |
| ProteinID:CDY33959.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00055795001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EF0412 | SEG:seg | : | : | : | : |
Description
BnaC02g43780DBnaC02g43780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8Y1]
Coordinates
chrLK032325:+:136552..138371
Molecular Weight (calculated)
34474.8 Da
IEP (calculated)
6.254
GRAVY (calculated)
-0.042
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENLELSLL CSETINVGDD DMIFGREVSN FQIGFPLESE EIIREMMEKE KQHLPSDDYI RRLRSGDMDF NARRRKALNW IFKRERCCLK SACEVHQFGP
101: LCICLSVNYF DRFLSVHDLP YDKAWTMQLL AVACLSLAAK LEETYVPRLL IDLQVGHPEF LFVAKSIQRM ELLVVNRLEG RLRAITPCSY ISYFLRKMSK
201: SDQEPSNTLI SISLQVIASK AKGIDFLEFR PSEVAAAVAL YVSGELHTVQ FDDSSFSPLF SPLQKERVKK IGGMIESGGS GLCSQTPSGV LEVSASCFSI
301: KTHAY
101: LCICLSVNYF DRFLSVHDLP YDKAWTMQLL AVACLSLAAK LEETYVPRLL IDLQVGHPEF LFVAKSIQRM ELLVVNRLEG RLRAITPCSY ISYFLRKMSK
201: SDQEPSNTLI SISLQVIASK AKGIDFLEFR PSEVAAAVAL YVSGELHTVQ FDDSSFSPLF SPLQKERVKK IGGMIESGGS GLCSQTPSGV LEVSASCFSI
301: KTHAY
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKIRG LCRTDREACE
101: VHQFGPLCFC LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL
201: RKMSKCDQEP SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA
301: CCFSFKTHDS SSSYTHLS
101: VHQFGPLCFC LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL
201: RKMSKCDQEP SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA
301: CCFSFKTHDS SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.