Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009612.1-P | Field mustard | cytosol | 99.12 | 99.12 |
| CDY10467 | Canola | cytosol | 94.12 | 94.4 |
| CDY55121 | Canola | cytosol | 77.06 | 76.38 |
| AT5G02110.1 | Thale cress | cytosol | 63.53 | 63.34 |
| CDX80803 | Canola | cytosol | 75.0 | 56.54 |
| KRH75669 | Soybean | cytosol | 30.29 | 35.64 |
| KRH65892 | Soybean | cytosol | 29.71 | 35.07 |
| KRH54622 | Soybean | cytosol | 15.29 | 33.99 |
| KRH54628 | Soybean | cytosol | 15.29 | 33.99 |
| VIT_08s0007g00790.t01 | Wine grape | nucleus | 31.76 | 31.95 |
| GSMUA_Achr10P... | Banana | cytosol | 22.06 | 29.64 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 22.35 | 27.64 |
| CDY11608 | Canola | nucleus | 23.82 | 25.55 |
| Os11t0706801-00 | Rice | nucleus | 23.82 | 25.31 |
| CDY38800 | Canola | nucleus | 23.24 | 24.76 |
| TraesCS4A01G177400.1 | Wheat | cytosol | 24.12 | 24.62 |
| CDY67142 | Canola | nucleus | 24.12 | 24.19 |
| TraesCS4B01G140400.1 | Wheat | cytosol, nucleus, plastid | 23.53 | 24.1 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 23.24 | 23.44 |
| CDY54717 | Canola | nucleus | 17.65 | 22.56 |
| CDY13755 | Canola | nucleus | 19.12 | 22.26 |
| CDX81286 | Canola | nucleus | 17.35 | 22.18 |
| CDY59943 | Canola | nucleus | 23.53 | 22.16 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 11.18 | 22.09 |
| CDY08795 | Canola | nucleus | 20.0 | 22.08 |
| CDX97009 | Canola | nucleus | 18.82 | 21.84 |
| CDY14561 | Canola | cytosol | 20.59 | 21.54 |
| CDX69832 | Canola | nucleus | 18.53 | 21.21 |
| CDY17742 | Canola | nucleus | 22.06 | 21.13 |
| CDY30607 | Canola | nucleus | 21.76 | 20.96 |
| CDY02095 | Canola | nucleus | 20.0 | 20.73 |
| CDX83112 | Canola | nucleus | 21.18 | 20.45 |
| CDY23022 | Canola | nucleus | 19.71 | 20.36 |
| Zm00001d048594_P001 | Maize | cytosol | 25.29 | 20.24 |
| CDY25602 | Canola | nucleus | 21.18 | 20.22 |
| OQU84124 | Sorghum | nucleus | 25.29 | 20.14 |
| CDX76917 | Canola | nucleus | 20.88 | 20.06 |
| CDY01425 | Canola | nucleus | 20.88 | 20.06 |
| CDY33959 | Canola | nucleus | 17.94 | 20.0 |
| CDX89480 | Canola | nucleus | 20.88 | 20.0 |
| CDX68573 | Canola | nucleus | 20.59 | 19.89 |
| CDY12825 | Canola | nucleus | 20.88 | 19.83 |
| CDX76265 | Canola | nucleus | 21.18 | 19.73 |
| CDY57741 | Canola | nucleus | 20.88 | 19.45 |
| CDY37828 | Canola | nucleus | 17.65 | 19.42 |
| CDX72453 | Canola | nucleus | 20.29 | 19.17 |
| CDY49278 | Canola | nucleus | 20.29 | 18.7 |
| CDX75405 | Canola | nucleus | 20.29 | 18.5 |
| CDY69708 | Canola | nucleus | 20.29 | 18.45 |
| CDY22116 | Canola | nucleus | 15.88 | 18.12 |
| CDY21951 | Canola | nucleus | 15.59 | 17.55 |
| CDX90892 | Canola | nucleus | 7.65 | 17.11 |
| CDY29570 | Canola | nucleus | 16.18 | 16.47 |
| CDX72643 | Canola | nucleus | 16.18 | 16.18 |
Protein Annotations
| EnsemblPlants:CDY40332 | EnsemblPlantsGene:GSBRNA2T00069517001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF215 | PFAM:PF00134 | PIRSF:PIRSF001771 | ProteinID:CDY40332 | ProteinID:CDY40332.1 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EDD792 | UniProt:A0A078HR66 | MapMan:13.1.1.1.4 |
Description
BnaA10g27360DBnaA10g27360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR66]
Coordinates
chrLK032468:+:159185..160787
Molecular Weight (calculated)
38630.3 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.142
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLLCDESW LSDPSTPEPF PNFRLNIHDD HVEMSPAMDA ATVEEAISMD LEKESCFSNH GDKFIEFLVS KKLTDARSQT VQWLIQTRNR LNLSFETIFS
101: AASCFDRFVY ATICNEWSKW MVELVAVTSL SIASKFNEVS SPSLEDFQME GLNHIFHHKT VLEMELIVLK ALEWRVNWVT SFSFSQILVT TIGMGGGDIM
201: MNRITDHLLD DLCDLKMLAY APSVVAVAVV LGFLEEKAAL EEKLGKIMNL FGEEHKVSVA KCINVMKSRN VEEGWRREVK SPASVLQRGE VMNMNIVYYV
301: ENLSAIFQIL RSGGSDKKRE RDSHEDENRP GKRVTIVTSN
101: AASCFDRFVY ATICNEWSKW MVELVAVTSL SIASKFNEVS SPSLEDFQME GLNHIFHHKT VLEMELIVLK ALEWRVNWVT SFSFSQILVT TIGMGGGDIM
201: MNRITDHLLD DLCDLKMLAY APSVVAVAVV LGFLEEKAAL EEKLGKIMNL FGEEHKVSVA KCINVMKSRN VEEGWRREVK SPASVLQRGE VMNMNIVYYV
301: ENLSAIFQIL RSGGSDKKRE RDSHEDENRP GKRVTIVTSN
001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
Arabidopsis Description
CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.