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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P16400_001
GSMUA_Achr6P17910_001
GSMUA_Achr6P20740_001
GSMUA_Achr9P01520_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02110.1 GSMUA_Achr2P11710_001 AT2G27960.1 20706207
AT5G02110.1 GSMUA_Achr2P11750_001 AT2G27960.1 20706207
AT5G02110.1 GSMUA_Achr2P11710_001 AT2G27970.1 20706207
AT5G02110.1 GSMUA_Achr2P11750_001 AT2G27970.1 20706207
AT5G02110.1 GSMUA_Achr11P... AT3G48750.1 20706207
AT5G02110.1 GSMUA_Achr2P16400_001 AT5G02220.1 20706207
AT5G02110.1 GSMUA_Achr6P17910_001 AT5G02220.1 20706207
AT5G02110.1 GSMUA_Achr6P20740_001 AT5G14170.1 20706207
AT5G02110.1 GSMUA_Achr9P01520_001 AT5G14170.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana cytosol 61.45 66.8
TraesCS4B01G140400.1 Wheat cytosol, nucleus, plastid 44.0 36.45
TraesCS4A01G177400.1 Wheat cytosol 43.64 36.04
TraesCS4D01G135100.1 Wheat cytosol, nucleus, plastid 44.0 35.91
Os11t0706801-00 Rice nucleus 39.27 33.75
KRH54622 Soybean cytosol 17.09 30.72
KRH54628 Soybean cytosol 17.09 30.72
KRH65892 Soybean cytosol 30.91 29.51
VIT_08s0007g00790.t01 Wine grape nucleus 35.64 28.99
KRH75669 Soybean cytosol 30.18 28.72
OQU84124 Sorghum nucleus 43.64 28.1
Zm00001d048594_P001 Maize cytosol 43.27 28.0
GSMUA_Achr4P23840_001 Banana cytosol, nucleus, plasma membrane 23.64 25.9
GSMUA_Achr10P... Banana nucleus 29.45 25.23
GSMUA_Achr3P06030_001 Banana cytosol 26.18 24.32
GSMUA_Achr6P24270_001 Banana nucleus 26.18 23.68
GSMUA_Achr5P17920_001 Banana nucleus 29.45 23.41
GSMUA_Achr9P15070_001 Banana nucleus 29.45 23.14
GSMUA_Achr8P23430_001 Banana nucleus 28.73 22.77
GSMUA_Achr6P02210_001 Banana plastid 20.36 22.49
GSMUA_Achr3P06730_001 Banana nucleus 28.36 22.48
CDY10467 Canola cytosol 27.64 22.42
GSMUA_Achr10P... Banana nucleus 28.0 22.38
CDY40332 Canola cytosol 27.64 22.35
Bra009612.1-P Field mustard cytosol 27.64 22.35
GSMUA_Achr6P10260_001 Banana cytosol 29.45 22.31
GSMUA_Achr10P... Banana nucleus 28.73 22.25
GSMUA_Achr10P... Banana nucleus 22.91 22.03
GSMUA_Achr9P24600_001 Banana cytosol, nucleus, plasma membrane 24.0 22.0
GSMUA_Achr9P30040_001 Banana cytosol, nucleus, peroxisome 19.27 21.9
Bra005708.1-P Field mustard cytosol 26.91 21.57
CDY55121 Canola cytosol 26.91 21.57
GSMUA_Achr7P19040_001 Banana cytosol, endoplasmic reticulum, nucleus 28.0 21.51
GSMUA_Achr9P28180_001 Banana nucleus 23.64 21.45
GSMUA_Achr5P22980_001 Banana nucleus 26.91 21.2
GSMUA_Achr6P07740_001 Banana nucleus 24.36 21.07
GSMUA_Achr7P12850_001 Banana nucleus 27.64 21.05
GSMUA_Achr3P21210_001 Banana nucleus 26.91 20.96
GSMUA_Achr2P22330_001 Banana nucleus 26.91 20.79
AT5G02110.1 Thale cress cytosol 25.45 20.53
GSMUA_Achr6P16910_001 Banana cytosol 20.73 20.5
GSMUA_Achr4P07110_001 Banana nucleus 23.64 20.31
GSMUA_Achr7P26100_001 Banana nucleus 26.18 19.62
GSMUA_Achr1P22570_001 Banana nucleus 25.82 18.64
GSMUA_AchrUn_... Banana cytosol 21.45 18.61
GSMUA_Achr7P19980_001 Banana nucleus 26.18 18.51
GSMUA_Achr1P09780_001 Banana cytosol 25.82 18.3
GSMUA_Achr4P20220_001 Banana nucleus 22.91 17.4
GSMUA_Achr3P01010_001 Banana nucleus 25.09 16.95
GSMUA_Achr3P13140_001 Banana nucleus 24.73 16.71
GSMUA_Achr2P05260_001 Banana nucleus 20.36 16.23
CDX80803 Canola cytosol 26.55 16.19
GSMUA_Achr9P12120_001 Banana nucleus 24.36 15.88
Protein Annotations
EnsemblPlants:GSMUA_Achr6P34040_001EnsemblPlants:GSMUA_Achr6T34040_001EnsemblPlantsGene:GSMUA_Achr6G34040_001Gene3D:1.10.472.10InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_NPANTHER:PTHR10177PANTHER:PTHR10177:SF215PFAM:PF00134PIRSF:PIRSF001771ScanProsite:PS00292
SEG:segSMART:SM00385SUPFAM:SSF47954UniParc:UPI000296F803UniProt:M0TCJ7MapMan:13.1.1.1.4
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G34040_001]
Coordinates
chr6:+:32893927..32895116
Molecular Weight (calculated)
31014.4 Da
IEP (calculated)
6.336
GRAVY (calculated)
0.052
Length
275 amino acids
Sequence
(BLAST)
001: MEDSGLCLLC DEEPFVLSPT PPPARASPSS SPPPSMVSSA AVEDRDVILH DLLRREHRYL PCHGYSHQLH RSSYLPAART RAIQYIILVC NRLNLATGTA
101: FNAVNYLDRF ISVNCTVRWE DWMMELLSVA CLSIASKMDE VSMPSLHDLQ MEELGHSFDA RTIQQMELTV LKTLDWRLAC ITAYTYVEVF TWGLSHVHSP
201: YIPRMIDLLL CALVDSRFQR FHQSTVAASA LQTLAGSEAA FSLLALPNPV QNMVRLLSLL PSRDRNLSQN SLIYY
Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)
001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
Arabidopsis Description
CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.