Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 69.42 | 70.99 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 68.59 | 70.54 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 67.22 | 68.54 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 41.6 | 60.64 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 58.13 | 60.29 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 56.75 | 59.54 |
| GSMUA_Achr10P... | Banana | nucleus | 51.79 | 58.57 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 57.3 | 58.1 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 55.37 | 57.93 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 55.65 | 57.88 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 55.1 | 57.64 |
| GSMUA_Achr10P... | Banana | nucleus | 53.72 | 56.69 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 54.27 | 54.57 |
| Zm00001d052185_P001 | Maize | nucleus | 49.31 | 49.72 |
| Zm00001d018128_P001 | Maize | nucleus | 48.48 | 49.58 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 47.38 | 49.0 |
| TraesCS6B01G345300.1 | Wheat | plastid | 47.38 | 48.73 |
| EES07560 | Sorghum | nucleus | 47.11 | 47.77 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 46.83 | 47.49 |
| KXG19603 | Sorghum | nucleus | 40.77 | 42.53 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 29.48 | 42.46 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 30.3 | 36.3 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 28.37 | 34.8 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 34.99 | 34.6 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 33.06 | 31.5 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 21.76 | 31.47 |
| GSMUA_Achr10P... | Banana | nucleus | 24.52 | 31.12 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 25.9 | 30.92 |
| GSMUA_Achr10P... | Banana | cytosol | 20.94 | 30.04 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 26.17 | 29.87 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 22.31 | 29.45 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 31.41 | 29.31 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 19.01 | 28.51 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 21.49 | 28.06 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 23.14 | 28.0 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 29.48 | 27.58 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 23.97 | 27.19 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 24.52 | 25.8 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 25.34 | 25.41 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 28.1 | 25.06 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 27.55 | 24.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.94 | 23.97 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 25.9 | 22.27 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr6G10260_001 | EnsemblPlants:GSMUA_Achr6P10260_001 |
| EnsemblPlants:GSMUA_Achr6T10260_001 | UniProt:M0T5S5 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00029606CB | SEG:seg |
Description
Putative Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10260_001]
Coordinates
chr6:+:6851213..6853017
Molecular Weight (calculated)
40542.1 Da
IEP (calculated)
5.611
GRAVY (calculated)
-0.262
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSYRFASS VLLCPEDGKS ILGSDDEEKQ EQGLNGEVER RSLCHFPGEG GDFYGEPLPS EDRIALMVER ESHHLPEGDY AGRLRRGQLD RAVRSDAIDW
101: IQRVVLHLLS FFAAEVHAHY KFGPLSAYLS VNYLDRFLSA YKLPQGKAWM TQLLSVACLS IAAKVEEAEV PSSLELQVGE AKYVFEARTI QRMELLVLST
201: LKWRMQAVTP FSFVDYFLYK LSDEKSPDSL LIYRSMDLIL GTIRESDFLE FRPSEIAAAA ALSALKETQN SGIDMSLTCC IHVDTERVLR CHQVIQEMTL
301: MKNRTYSDNN SPSVSTVTKS PIGVLDAGVA SYESDDTTAG SHADCHHSSP ATKRRKLNRP STS
101: IQRVVLHLLS FFAAEVHAHY KFGPLSAYLS VNYLDRFLSA YKLPQGKAWM TQLLSVACLS IAAKVEEAEV PSSLELQVGE AKYVFEARTI QRMELLVLST
201: LKWRMQAVTP FSFVDYFLYK LSDEKSPDSL LIYRSMDLIL GTIRESDFLE FRPSEIAAAA ALSALKETQN SGIDMSLTCC IHVDTERVLR CHQVIQEMTL
301: MKNRTYSDNN SPSVSTVTKS PIGVLDAGVA SYESDDTTAG SHADCHHSSP ATKRRKLNRP STS
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.