Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11710_001 | |
| GSMUA_Achr2P11750_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16910_001 | Banana | cytosol | 55.35 | 63.31 |
| GSMUA_Achr10P... | Banana | nucleus | 39.62 | 44.06 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 42.14 | 42.27 |
| KRH61407 | Soybean | nucleus | 39.62 | 40.38 |
| KRH52092 | Soybean | nucleus | 38.99 | 39.49 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 40.88 | 39.39 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 38.36 | 38.12 |
| KRH28363 | Soybean | nucleus | 38.36 | 36.86 |
| KRH77118 | Soybean | nucleus | 37.74 | 36.14 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 36.48 | 33.72 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 36.48 | 33.05 |
| CDX72643 | Canola | nucleus | 35.22 | 32.94 |
| CDY29570 | Canola | nucleus | 34.59 | 32.93 |
| Bra017840.1-P | Field mustard | nucleus | 35.22 | 32.84 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 33.65 | 32.42 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 34.59 | 31.52 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 24.53 | 31.33 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 34.28 | 31.05 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 34.28 | 30.97 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 34.28 | 30.97 |
| Os03t0203800-01 | Rice | nucleus | 33.33 | 30.72 |
| Zm00001d041345_P001 | Maize | cytosol | 32.7 | 29.8 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 31.45 | 29.76 |
| AT4G37630.1 | Thale cress | nucleus | 30.19 | 29.72 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 31.45 | 29.67 |
| EER92677 | Sorghum | nucleus | 32.7 | 29.3 |
| EES17294 | Sorghum | nucleus | 33.33 | 29.2 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 32.39 | 29.18 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 30.82 | 29.08 |
| Zm00001d030894_P002 | Maize | nucleus | 31.45 | 28.99 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 33.96 | 28.72 |
| GSMUA_Achr10P... | Banana | nucleus | 28.93 | 28.66 |
| EER91226 | Sorghum | nucleus | 33.33 | 28.65 |
| Zm00001d033330_P001 | Maize | nucleus | 31.76 | 28.53 |
| Os12t0588800-01 | Rice | nucleus | 32.39 | 28.22 |
| Zm00001d013728_P001 | Maize | cytosol | 32.08 | 27.95 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 25.16 | 27.03 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 29.25 | 26.8 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 25.47 | 26.73 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 29.25 | 26.57 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 20.75 | 26.29 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 29.87 | 26.17 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 30.19 | 26.16 |
| HORVU4Hr1G013700.2 | Barley | plastid | 32.39 | 26.08 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 19.81 | 26.03 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 27.67 | 25.43 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 28.3 | 25.28 |
| GSMUA_Achr10P... | Banana | nucleus | 27.99 | 25.07 |
| GSMUA_Achr10P... | Banana | nucleus | 27.04 | 25.0 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 23.9 | 25.0 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 27.67 | 24.93 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 27.36 | 24.93 |
| GSMUA_Achr10P... | Banana | cytosol | 19.81 | 24.9 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 27.04 | 24.78 |
| Zm00001d028092_P001 | Maize | cytosol | 21.07 | 24.63 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 27.67 | 24.58 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 21.07 | 24.36 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 27.04 | 23.82 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 28.3 | 23.62 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 28.62 | 23.45 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 26.1 | 22.93 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 24.84 | 22.9 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 21.38 | 22.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.33 | 22.4 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 27.99 | 21.87 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 27.67 | 21.62 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 7.55 | 20.0 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 23.58 | 19.28 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 23.58 | 17.77 |
| Zm00001d003439_P001 | Maize | plastid | 6.92 | 17.32 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr6G07740_001 |
| EnsemblPlants:GSMUA_Achr6P07740_001 | EnsemblPlants:GSMUA_Achr6T07740_001 | UniProt:M0T523 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF255 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000294E2A0 | SEG:seg | : | : | : | : |
Description
Putative Cyclin-D5-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07740_001]
Coordinates
chr6:-:5242984..5244309
Molecular Weight (calculated)
35482.3 Da
IEP (calculated)
4.926
GRAVY (calculated)
-0.102
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSGYMVSL STLICKEHET CFDVQETEEE EEEENAKVML CEEDSDEYVE MLLNRESCFC SATPDAAAGN SVNSARSDAV RWILRTKAFF GFSMKTAYVA
101: VIYLDHFFMH RTPDSIKGKS WAIRLLSVAC LSLAVKMEER KVPALSEFQT EDYRFDTEAI QRMELLVLGT LEWRMSMVTP FSYLSHFASK LQQHASEGVL
201: WKAIKLVFAS IEVMNLVDYR ASVIAAAAVL AASDEGLTQK SVKSKMSTVS SCRSLDTDHV FSCYSLLIQE TQKEKLKTSK GLAPPDHSVA DGLSVDSSVD
301: TDGTISFVVA SSKRRRLQ
101: VIYLDHFFMH RTPDSIKGKS WAIRLLSVAC LSLAVKMEER KVPALSEFQT EDYRFDTEAI QRMELLVLGT LEWRMSMVTP FSYLSHFASK LQQHASEGVL
201: WKAIKLVFAS IEVMNLVDYR ASVIAAAAVL AASDEGLTQK SVKSKMSTVS SCRSLDTDHV FSCYSLLIQE TQKEKLKTSK GLAPPDHSVA DGLSVDSSVD
301: TDGTISFVVA SSKRRRLQ
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.