Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29570 | Canola | nucleus | 95.0 | 96.71 |
| AT4G37630.1 | Thale cress | nucleus | 79.41 | 83.59 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 36.47 | 37.58 |
| KRH77118 | Soybean | nucleus | 35.0 | 35.84 |
| KRH28363 | Soybean | nucleus | 34.41 | 35.35 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 32.94 | 35.22 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 28.53 | 34.89 |
| GSMUA_Achr10P... | Banana | nucleus | 28.24 | 33.57 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 27.94 | 27.07 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 27.94 | 26.99 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 27.94 | 26.99 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 27.65 | 26.93 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 26.47 | 26.79 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 26.47 | 26.71 |
| Os12t0588800-01 | Rice | nucleus | 28.53 | 26.58 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 26.18 | 26.41 |
| Zm00001d030894_P002 | Maize | nucleus | 26.47 | 26.09 |
| Zm00001d041345_P001 | Maize | cytosol | 26.76 | 26.07 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 25.29 | 26.06 |
| CDY54717 | Canola | nucleus | 20.29 | 25.94 |
| EES17294 | Sorghum | nucleus | 27.65 | 25.9 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 24.12 | 25.62 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 25.88 | 25.58 |
| CDX81286 | Canola | nucleus | 20.0 | 25.56 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 26.18 | 25.36 |
| CDY11608 | Canola | nucleus | 23.53 | 25.24 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 12.65 | 25.0 |
| CDY38800 | Canola | nucleus | 22.94 | 24.45 |
| CDY08795 | Canola | nucleus | 22.06 | 24.35 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 26.76 | 24.2 |
| Os03t0203800-01 | Rice | nucleus | 24.41 | 24.06 |
| Zm00001d033330_P001 | Maize | nucleus | 25.0 | 24.01 |
| CDX89480 | Canola | nucleus | 25.0 | 23.94 |
| CDX76265 | Canola | nucleus | 25.59 | 23.84 |
| EER91226 | Sorghum | nucleus | 25.88 | 23.78 |
| CDY14561 | Canola | cytosol | 22.65 | 23.69 |
| CDY67142 | Canola | nucleus | 23.53 | 23.6 |
| CDY25602 | Canola | nucleus | 24.71 | 23.6 |
| CDX83112 | Canola | nucleus | 24.41 | 23.58 |
| CDX68573 | Canola | nucleus | 24.41 | 23.58 |
| CDY57741 | Canola | nucleus | 25.29 | 23.56 |
| CDY13755 | Canola | nucleus | 20.0 | 23.29 |
| CDY69708 | Canola | nucleus | 25.59 | 23.26 |
| CDY30607 | Canola | nucleus | 24.12 | 23.23 |
| EER92677 | Sorghum | nucleus | 24.12 | 23.1 |
| CDX75405 | Canola | nucleus | 25.29 | 23.06 |
| CDX72453 | Canola | nucleus | 24.41 | 23.06 |
| CDY49278 | Canola | nucleus | 25.0 | 23.04 |
| CDY02095 | Canola | nucleus | 21.76 | 22.56 |
| CDX69832 | Canola | nucleus | 19.71 | 22.56 |
| CDY17742 | Canola | nucleus | 23.53 | 22.54 |
| HORVU4Hr1G013700.2 | Barley | plastid | 26.18 | 22.53 |
| CDX97009 | Canola | nucleus | 19.41 | 22.53 |
| Zm00001d013728_P001 | Maize | cytosol | 24.12 | 22.47 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 23.24 | 22.38 |
| CDY23022 | Canola | nucleus | 21.47 | 22.19 |
| CDY59943 | Canola | nucleus | 23.53 | 22.16 |
| CDX76917 | Canola | nucleus | 22.94 | 22.03 |
| CDY33959 | Canola | nucleus | 19.12 | 21.31 |
| CDY37828 | Canola | nucleus | 19.12 | 21.04 |
| CDY01425 | Canola | nucleus | 21.18 | 20.34 |
| Zm00001d028092_P001 | Maize | cytosol | 15.88 | 19.85 |
| CDY12825 | Canola | nucleus | 20.59 | 19.55 |
| CDY21951 | Canola | nucleus | 16.76 | 18.87 |
| CDY22116 | Canola | nucleus | 16.47 | 18.79 |
| CDX90892 | Canola | nucleus | 7.35 | 16.45 |
| CDY40332 | Canola | cytosol | 16.18 | 16.18 |
| CDY10467 | Canola | cytosol | 15.88 | 15.93 |
| CDY55121 | Canola | cytosol | 14.71 | 14.58 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 5.0 | 14.17 |
| Zm00001d003439_P001 | Maize | plastid | 4.41 | 11.81 |
| CDX80803 | Canola | cytosol | 14.12 | 10.64 |
Protein Annotations
| EnsemblPlants:CDX72643 | EnsemblPlantsGene:GSBRNA2T00100201001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF255 | PFAM:PF00134 | PIRSF:PIRSF001771 | ProteinID:CDX72643 | ProteinID:CDX72643.1 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EDE4E9 | MapMan:13.1.1.1.4 | : |
Description
BnaC07g46650D
Coordinates
chrLK031796:+:2345492..2347259
Molecular Weight (calculated)
38803.5 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.558
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEPRDSLAL SNLLICHESE SCLNEQQQDD DDDETKIERS DEQQKPHCFA TIGDDDEDYV AELVRKENRR FDDDDDKPTK TTSSLDRLIA IDWILATRTR
101: FGFQHQTAYI AISYLDLFLH KRFIGLQKDE SWAIRLLSVA SLSLAAKMEE RVVPGLSQYP QDQDFVFKPD VIRKTELLIL STLDWKMSLI TPFHYLNYFL
201: AKISPDRNQS VSKELVLLRS SESLLALTKE ISVTDNRQYV VAAATTLLAS STSSDIRLTR EEMGNKFGSV SWWTSNENDN VYSCYERMQE IEERKHMTPP
301: ELAVPGPVVG SGSGAKRRLS FDDSDQPSSS SPDAKRMRRL
101: FGFQHQTAYI AISYLDLFLH KRFIGLQKDE SWAIRLLSVA SLSLAAKMEE RVVPGLSQYP QDQDFVFKPD VIRKTELLIL STLDWKMSLI TPFHYLNYFL
201: AKISPDRNQS VSKELVLLRS SESLLALTKE ISVTDNRQYV VAAATTLLAS STSSDIRLTR EEMGNKFGSV SWWTSNENDN VYSCYERMQE IEERKHMTPP
301: ELAVPGPVVG SGSGAKRRLS FDDSDQPSSS SPDAKRMRRL
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.