Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83112 | Canola | nucleus | 97.16 | 97.16 |
| CDY02095 | Canola | nucleus | 78.69 | 84.45 |
| CDY23022 | Canola | nucleus | 78.69 | 84.19 |
| AT3G50070.1 | Thale cress | nucleus | 81.25 | 79.22 |
| CDY30607 | Canola | nucleus | 77.84 | 77.62 |
| CDY17742 | Canola | nucleus | 76.99 | 76.34 |
| CDY01425 | Canola | nucleus | 66.48 | 66.1 |
| CDY12825 | Canola | nucleus | 66.48 | 65.36 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 31.82 | 65.12 |
| Solyc02g092980.2.1 | Tomato | nucleus | 49.72 | 48.75 |
| KRH04529 | Soybean | nucleus | 50.85 | 48.25 |
| PGSC0003DMT400064307 | Potato | nucleus | 48.86 | 47.38 |
| KRH57973 | Soybean | nucleus | 50.57 | 46.48 |
| PGSC0003DMT400031329 | Potato | nucleus | 42.33 | 46.27 |
| KRH77050 | Soybean | nucleus, plastid | 43.18 | 45.51 |
| KRH28424 | Soybean | nucleus | 43.18 | 45.37 |
| PGSC0003DMT400068629 | Potato | cytosol | 29.26 | 42.92 |
| CDX75405 | Canola | nucleus | 45.45 | 42.9 |
| CDY49278 | Canola | nucleus | 44.89 | 42.82 |
| CDY69708 | Canola | nucleus | 45.45 | 42.78 |
| CDX72453 | Canola | nucleus | 43.75 | 42.78 |
| CDX76265 | Canola | nucleus | 43.75 | 42.19 |
| CDY57741 | Canola | nucleus | 43.47 | 41.92 |
| Solyc02g064900.1.1 | Tomato | nucleus | 41.19 | 41.91 |
| Solyc02g064860.1.1 | Tomato | nucleus | 27.84 | 41.7 |
| Solyc02g064910.1.1 | Tomato | nucleus | 27.27 | 40.85 |
| PGSC0003DMT400068627 | Potato | nucleus | 34.66 | 39.61 |
| PGSC0003DMT400011487 | Potato | nucleus | 20.45 | 39.13 |
| CDY13755 | Canola | nucleus | 28.41 | 34.25 |
| CDX81286 | Canola | nucleus | 24.72 | 32.71 |
| CDY38800 | Canola | nucleus | 28.98 | 31.97 |
| CDY54717 | Canola | nucleus | 24.15 | 31.95 |
| CDY11608 | Canola | nucleus | 28.69 | 31.86 |
| CDY67142 | Canola | nucleus | 29.83 | 30.97 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.68 | 30.51 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.4 | 30.48 |
| Os09t0111100-01 | Rice | cytosol | 31.25 | 30.22 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 30.97 | 30.11 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.11 | 29.94 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.11 | 29.94 |
| CDX76917 | Canola | nucleus | 29.83 | 29.66 |
| CDY59943 | Canola | nucleus | 30.11 | 29.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.42 | 29.34 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 32.1 | 29.12 |
| CDX89480 | Canola | nucleus | 29.26 | 29.01 |
| CDY25602 | Canola | nucleus | 29.26 | 28.93 |
| CDY14561 | Canola | cytosol | 26.7 | 28.92 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 28.12 | 28.7 |
| CDX97009 | Canola | nucleus | 23.86 | 28.67 |
| CDY08795 | Canola | nucleus | 25.0 | 28.57 |
| CDY37828 | Canola | nucleus | 25.0 | 28.48 |
| CDX69832 | Canola | nucleus | 23.86 | 28.28 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 32.67 | 28.26 |
| CDY33959 | Canola | nucleus | 24.43 | 28.2 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 32.39 | 28.01 |
| Zm00001d019696_P001 | Maize | cytosol | 30.11 | 27.39 |
| EER96424 | Sorghum | cytosol | 28.98 | 26.7 |
| Zm00001d005293_P001 | Maize | cytosol | 29.26 | 26.34 |
| CDY29570 | Canola | nucleus | 23.86 | 25.15 |
| CDX72643 | Canola | nucleus | 23.58 | 24.41 |
| CDY21951 | Canola | nucleus | 19.32 | 22.52 |
| CDY22116 | Canola | nucleus | 19.03 | 22.48 |
| CDY55121 | Canola | cytosol | 20.74 | 21.28 |
| CDY40332 | Canola | cytosol | 19.89 | 20.59 |
| CDY10467 | Canola | cytosol | 19.32 | 20.06 |
| CDX90892 | Canola | nucleus | 7.95 | 18.42 |
| CDX80803 | Canola | cytosol | 21.02 | 16.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078C0D5 | EnsemblPlants:CDX68573 | ProteinID:CDX68573 | ProteinID:CDX68573.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00126156001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF216 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EBBA12 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g26510D
Coordinates
chrLK031788:-:4258059..4259680
Molecular Weight (calculated)
40390.3 Da
IEP (calculated)
4.754
GRAVY (calculated)
-0.105
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFQEEEEVL NAPFCMLFCE EERSHELEGD ESVVKFPFFH LGFLDHDMLW DDDELLSLIS KENELRPCLS DTVLDEFLVL CREKALDWIF RVKTYYGFNA
101: LTALLAVNYF DTFLTSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGDARYV FEAKTIQRME LLILSTLQWR MHPVTPISYF DHIIRRCSSK
201: SHHDLEFLSR CESLLLSIVP DSRFLSYSPS VLATAIMVSV VGDSTTCDEA EYESQLMTLL KVDPEKVNKC YELVLDHIPS KKRMQPASPT GVFDASFNSD
301: SSNESWVASA SASVSASQSH EPLFKRRRVQ EQQMKLSPIN RMFLDVFTSS PR
101: LTALLAVNYF DTFLTSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGDARYV FEAKTIQRME LLILSTLQWR MHPVTPISYF DHIIRRCSSK
201: SHHDLEFLSR CESLLLSIVP DSRFLSYSPS VLATAIMVSV VGDSTTCDEA EYESQLMTLL KVDPEKVNKC YELVLDHIPS KKRMQPASPT GVFDASFNSD
301: SSNESWVASA SASVSASQSH EPLFKRRRVQ EQQMKLSPIN RMFLDVFTSS PR
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.