Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025573.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY50122 | Canola | nucleus | 98.11 | 98.11 |
| AT5G40460.1 | Thale cress | nucleus | 83.02 | 78.57 |
| CDY00151 | Canola | nucleus | 78.3 | 74.77 |
| CDY20043 | Canola | cytosol | 70.75 | 71.43 |
| CDX83722 | Canola | nucleus | 71.7 | 67.26 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 58.49 | 60.19 |
| KRG93247 | Soybean | nucleus | 57.55 | 56.48 |
| KRH56563 | Soybean | nucleus | 55.66 | 53.64 |
| CDX83719 | Canola | cytosol | 47.17 | 51.55 |
| Solyc02g086450.1.1 | Tomato | cytosol | 50.94 | 51.43 |
| Solyc02g067810.1.1 | Tomato | nucleus | 50.0 | 50.96 |
| PGSC0003DMT400017807 | Potato | cytosol | 49.06 | 50.0 |
| PGSC0003DMT400032809 | Potato | nucleus | 50.94 | 48.65 |
| CDY67838 | Canola | cytosol, nucleus, plastid | 48.11 | 46.36 |
| CDY19313 | Canola | nucleus | 46.23 | 44.55 |
| CDY40498 | Canola | cytosol | 37.74 | 36.36 |
| CDY67411 | Canola | cytosol | 37.74 | 36.36 |
Protein Annotations
| EnsemblPlants:CDY42582 | EnsemblPlantsGene:GSBRNA2T00075082001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | ProteinID:CDY42582 | ProteinID:CDY42582.1 |
| SEG:seg | UniParc:UPI0002544ECE | UniProt:A0A078HXM2 | MapMan:13.1.1.3.2 | : | : |
Description
BnaA04g10310DBnaA04g10310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXM2]
Coordinates
chrLK032529:-:209751..210071
Molecular Weight (calculated)
11926.4 Da
IEP (calculated)
10.078
GRAVY (calculated)
-0.761
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSKKSQLD GGLDFDGKKW VIAGIGIRAS LKPVKTKLRA PETEAEVEEE EECSTTPTAK EAKIPEKLKC PPAPRKRRPA LKCRSNAVRE FFTPPDDLET
101: VFIRRR
101: VFIRRR
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.