Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025292.1-P | Field mustard | nucleus | 87.61 | 85.34 |
| CDY20043 | Canola | cytosol | 76.99 | 82.86 |
| CDY00151 | Canola | nucleus | 80.53 | 81.98 |
| CDY42582 | Canola | cytosol | 67.26 | 71.7 |
| CDY50122 | Canola | nucleus | 66.37 | 70.75 |
| CDX83719 | Canola | cytosol | 59.29 | 69.07 |
| AT3G27630.1 | Thale cress | cytosol | 58.41 | 66.67 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 42.48 | 46.6 |
| KRG93247 | Soybean | nucleus | 42.48 | 44.44 |
| Solyc02g067810.1.1 | Tomato | nucleus | 39.82 | 43.27 |
| KRH56563 | Soybean | nucleus | 41.59 | 42.73 |
| PGSC0003DMT400017807 | Potato | cytosol | 38.94 | 42.31 |
| Solyc02g086450.1.1 | Tomato | cytosol | 38.94 | 41.9 |
| PGSC0003DMT400032809 | Potato | nucleus | 39.82 | 40.54 |
| CDY67838 | Canola | cytosol, nucleus, plastid | 38.94 | 40.0 |
| CDY19313 | Canola | nucleus | 38.94 | 40.0 |
| CDY67411 | Canola | cytosol | 31.86 | 32.73 |
| CDY40498 | Canola | cytosol | 30.09 | 30.91 |
Protein Annotations
| EnsemblPlants:CDX83722 | EnsemblPlantsGene:GSBRNA2T00139437001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | ProteinID:CDX83722 | ProteinID:CDX83722.1 |
| SEG:seg | UniParc:UPI0004EEED57 | MapMan:13.1.1.3.2 | : | : | : |
Description
BnaC07g24620D
Coordinates
chrLK031833:+:1837845..1838186
Molecular Weight (calculated)
12886.5 Da
IEP (calculated)
9.561
GRAVY (calculated)
-0.797
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: METSKKSQVG RGLDTDGSKW VIAEISIRAS LKPVKTKLKR HERDTEAEEV EHYSGSEEYC ITPTAKEEAK LSEKLICPPA PRKRRPALKC RSNVGIEYFV
101: PPSDLETVFI RRR
101: PPSDLETVFI RRR
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.