Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g103010.2.1 | |
| Solyc08g066330.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40460.1 | Solyc01g103010.2.1 | AT2G02560.1 | 20706207 |
| AT5G40460.1 | Solyc08g066330.1.1 | AT3G48750.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017807 | Potato | cytosol | 94.23 | 94.23 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 67.31 | 67.96 |
| Solyc02g086450.1.1 | Tomato | cytosol | 66.35 | 65.71 |
| KRG93247 | Soybean | nucleus | 55.77 | 53.7 |
| KRH56563 | Soybean | nucleus | 53.85 | 50.91 |
| Bra025573.1-P | Field mustard | cytosol | 50.96 | 50.0 |
| CDY42582 | Canola | cytosol | 50.96 | 50.0 |
| CDY50122 | Canola | nucleus | 50.96 | 50.0 |
| AT5G40460.1 | Thale cress | nucleus | 52.88 | 49.11 |
| Bra039074.1-P | Field mustard | cytosol | 43.27 | 42.86 |
| CDY00151 | Canola | nucleus | 45.19 | 42.34 |
| CDY20043 | Canola | cytosol | 42.31 | 41.9 |
| AT3G27630.1 | Thale cress | cytosol | 38.46 | 40.4 |
| CDX83722 | Canola | nucleus | 43.27 | 39.82 |
| Bra025292.1-P | Field mustard | nucleus | 41.35 | 37.07 |
| CDX83719 | Canola | cytosol | 25.96 | 27.84 |
Protein Annotations
| EMBL:JQ670890 | EnsemblPlants:Solyc02g067810.1.1 | EnsemblPlantsGene:Solyc02g067810.1 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | SEG:seg |
| UniParc:UPI0002767597 | UniProt:K4B7B3 | MapMan:13.1.1.3.2 | : | : | : |
Description
EXG1 [Source:UniProtKB/TrEMBL;Acc:K4B7B3]
Coordinates
chr2:+:37924534..37924848
Molecular Weight (calculated)
11748.0 Da
IEP (calculated)
9.795
GRAVY (calculated)
-0.874
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSKKNQVE VNKEENKKWV IAGIAILAPL RSISTKPKGD STEDEEEFST TPTARGSRIP ERLPCPPAPM KRRPKSTCHY NSGREFFNPP DLESVFIRHV
101: ERAN
101: ERAN
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.