Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025573.1-P | Field mustard | cytosol | 78.57 | 83.02 |
| CDY42582 | Canola | cytosol | 78.57 | 83.02 |
| CDY50122 | Canola | nucleus | 78.57 | 83.02 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 56.25 | 61.16 |
| AT3G27630.1 | Thale cress | cytosol | 50.89 | 57.58 |
| KRG93247 | Soybean | nucleus | 52.68 | 54.63 |
| Solyc02g067810.1.1 | Tomato | nucleus | 49.11 | 52.88 |
| KRH56563 | Soybean | nucleus | 51.79 | 52.73 |
| PGSC0003DMT400017807 | Potato | cytosol | 47.32 | 50.96 |
| Solyc02g086450.1.1 | Tomato | cytosol | 46.43 | 49.52 |
| AT1G10690.1 | Thale cress | nucleus | 47.32 | 48.18 |
| PGSC0003DMT400032809 | Potato | nucleus | 46.43 | 46.85 |
| AT1G60783.1 | Thale cress | nucleus | 41.96 | 44.34 |
Protein Annotations
| MapMan:13.1.1.3.2 | EntrezGene:834044 | ProteinID:AED94550.1 | ArrayExpress:AT5G40460 | EnsemblPlantsGene:AT5G40460 | RefSeq:AT5G40460 |
| TAIR:AT5G40460 | RefSeq:AT5G40460-TAIR-G | EnsemblPlants:AT5G40460.1 | TAIR:AT5G40460.1 | EMBL:AY086640 | ProteinID:BAB10495.1 |
| EMBL:BT024675 | GO:GO:0003674 | GO:GO:0004860 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0006469 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030234 | RefSeq:NP_198862.1 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR33142 |
| PANTHER:PTHR33142:SF2 | UniProt:Q29Q81 | UniParc:UPI00001627E1 | SEG:seg | : | : |
Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
Coordinates
chr5:+:16202142..16203358
Molecular Weight (calculated)
12708.3 Da
IEP (calculated)
8.655
GRAVY (calculated)
-0.680
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.