Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56563 | Soybean | nucleus | 88.89 | 87.27 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 59.26 | 62.14 |
| CDY50122 | Canola | nucleus | 57.41 | 58.49 |
| Bra025573.1-P | Field mustard | cytosol | 56.48 | 57.55 |
| CDY42582 | Canola | cytosol | 56.48 | 57.55 |
| Solyc02g086450.1.1 | Tomato | cytosol | 55.56 | 57.14 |
| PGSC0003DMT400017807 | Potato | cytosol | 54.63 | 56.73 |
| Solyc02g067810.1.1 | Tomato | nucleus | 53.7 | 55.77 |
| PGSC0003DMT400032809 | Potato | nucleus | 54.63 | 53.15 |
| KRH69625 | Soybean | nucleus | 50.93 | 52.88 |
| AT5G40460.1 | Thale cress | nucleus | 54.63 | 52.68 |
| KRH74533 | Soybean | nucleus | 49.07 | 49.53 |
| KRG99417 | Soybean | cytosol | 50.0 | 45.38 |
| CDY00151 | Canola | nucleus | 44.44 | 43.24 |
| CDX83722 | Canola | nucleus | 44.44 | 42.48 |
| Bra039074.1-P | Field mustard | cytosol | 39.81 | 40.95 |
| CDY20043 | Canola | cytosol | 39.81 | 40.95 |
| KRH45611 | Soybean | cytosol | 49.07 | 40.15 |
| Bra025292.1-P | Field mustard | nucleus | 42.59 | 39.66 |
| AT3G27630.1 | Thale cress | cytosol | 33.33 | 36.36 |
| CDX83719 | Canola | cytosol | 30.56 | 34.02 |
Protein Annotations
| EMBL:ACUP02011545 | EnsemblPlants:KRG93247 | EnsemblPlantsGene:GLYMA_19G005400 | EntrezGene:100801316 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 |
| ProteinID:KRG93247 | ProteinID:KRG93247.1 | SEG:seg | UniParc:UPI000233F5CE | UniProt:I1N5I2 | MapMan:13.1.1.3.2 |
Description
hypothetical protein
Coordinates
chr19:+:491948..493875
Molecular Weight (calculated)
11721.9 Da
IEP (calculated)
8.340
GRAVY (calculated)
-0.872
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSHSDLES ESKKWVIAGI GVCSLKPIKT KRVAGGGDNE EEEEEETRST TPTAKEARIP EKLPCPPAPR KRRPPSRCGS NGGGGGVREF FTPPDLESVF
101: KCHVEKAK
101: KCHVEKAK
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.