Factsheet for VIT_14s0066g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00810.t01
VIT_07s0129g00200.t01
VIT_12s0035g01840.t01
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40460.1	VIT_12s0035g01840.t01	AT2G02560.1	20706207
AT5G40460.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G40460.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G40460.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207
AT5G40460.1	VIT_07s0129g00200.t01	AT4G37630.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017807	Potato	cytosol	68.93	68.27
Solyc02g067810.1.1	Tomato	nucleus	67.96	67.31
KRH56563	Soybean	nucleus	66.02	61.82
CDY50122	Canola	nucleus	62.14	60.38
VIT_00s0225g00120.t01	Wine grape	nucleus	62.14	59.81
PGSC0003DMT400032809	Potato	nucleus	64.08	59.46
KRG93247	Soybean	nucleus	62.14	59.26
CDY42582	Canola	cytosol	60.19	58.49
Bra025573.1-P	Field mustard	cytosol	60.19	58.49
Solyc02g086450.1.1	Tomato	cytosol	58.25	57.14
AT5G40460.1	Thale cress	nucleus	61.16	56.25
CDY00151	Canola	nucleus	49.51	45.95
CDY20043	Canola	cytosol	46.6	45.71
Bra039074.1-P	Field mustard	cytosol	46.6	45.71
AT3G27630.1	Thale cress	cytosol	41.75	43.43
CDX83722	Canola	nucleus	46.6	42.48
Bra025292.1-P	Field mustard	nucleus	45.63	40.52
CDX83719	Canola	cytosol	29.13	30.93

Protein Annotations

ArrayExpress:VIT_14s0066g00600	EMBL:AM479354	EMBL:FN596252	EnsemblPlants:VIT_14s0066g00600.t01	EnsemblPlantsGene:VIT_14s0066g00600	EntrezGene:100268049
EntrezGene:LOC100268049	PANTHER:PTHR33142	PANTHER:PTHR33142:SF2	ProteinID:CAN59885	ProteinID:CAN59885.1	ProteinID:CCB58474
ProteinID:CCB58474.1	RefSeq:XP_002274411	RefSeq:XP_002274411.1	TIGR:TC55985	unigene:Vvi.15379	UniParc:UPI00015220C0
UniProt:A5C232	wikigene:100268049	wikigene:LOC100268049	MapMan:13.1.1.3.2	:	:

Description

No Description!

Coordinates

chr14:-:27087956..27088713

Molecular Weight (calculated)

11607.8 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.845

Length

103 amino acids

Sequence
(BLAST)

001: MGFSEKPQVD GSIESEGKKW VIAGISIRAP LRPVSTKPRE KESDDEACST TPTTKEARIP ERLPCPPAPR KRRPSRCHLN GVREFFTPPD LESVFIRHVE
101: RAN

Best Arabidopsis Sequence Match ( AT5G40460.1 )
(BLAST)

001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR

Arabidopsis Description

SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.