Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01878 | Soybean | endoplasmic reticulum | 90.72 | 90.72 |
| KRH51281 | Soybean | endoplasmic reticulum | 90.48 | 90.55 |
| Solyc01g103010.2.1 | Tomato | cytosol | 87.44 | 87.51 |
| GSMUA_Achr10P... | Banana | cytosol | 84.81 | 83.92 |
| CDY09359 | Canola | cytosol | 82.76 | 82.83 |
| Bra026586.1-P | Field mustard | cytosol | 82.68 | 82.74 |
| AT2G02560.1 | Thale cress | cytosol | 82.68 | 82.61 |
| HORVU5Hr1G011280.4 | Barley | cytosol, endoplasmic reticulum, peroxisome | 42.94 | 82.23 |
| Os02t0167700-01 | Rice | plasma membrane | 82.02 | 82.02 |
| CDY41685 | Canola | cytosol | 82.59 | 81.79 |
| EES06334 | Sorghum | cytosol | 81.86 | 81.79 |
| KRH75237 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 21.76 | 81.54 |
| CDY03047 | Canola | cytosol | 82.02 | 81.42 |
| Bra024815.1-P | Field mustard | cytosol | 81.61 | 81.28 |
| CDY45206 | Canola | cytosol | 80.95 | 81.22 |
| TraesCS5D01G057500.1 | Wheat | cytosol | 81.28 | 81.21 |
| TraesCS5A01G046900.1 | Wheat | golgi | 81.12 | 81.05 |
| TraesCS5B01G051900.1 | Wheat | cytosol | 80.95 | 80.89 |
| HORVU2Hr1G005650.6 | Barley | cytosol | 80.3 | 80.23 |
| TraesCS2A01G037800.2 | Wheat | cytosol, unclear | 80.21 | 80.15 |
| TraesCS2D01G036800.1 | Wheat | cytosol | 80.13 | 80.07 |
| TraesCS2B01G051000.1 | Wheat | cytosol, golgi | 79.56 | 79.49 |
| HORVU5Hr1G059250.1 | Barley | cytosol | 4.19 | 72.86 |
| HORVU0Hr1G010280.1 | Barley | plastid | 6.32 | 72.64 |
| HORVU1Hr1G041480.1 | Barley | cytosol | 5.25 | 71.91 |
| Os02t0169800-01 | Rice | cytosol, plasma membrane | 18.39 | 71.34 |
| TraesCS5D01G419100.1 | Wheat | nucleus | 61.66 | 70.78 |
| HORVU7Hr1G036210.1 | Barley | endoplasmic reticulum, plastid | 4.02 | 70.0 |
| Zm00001d049167_P001 | Maize | plastid | 15.68 | 68.95 |
| HORVU1Hr1G041490.1 | Barley | cytosol | 3.04 | 64.91 |
| TraesCS5A01G409300.1 | Wheat | cytosol | 51.23 | 49.96 |
| Zm00001d050298_P001 | Maize | cytosol | 16.83 | 42.27 |
| Zm00001d027974_P002 | Maize | plastid | 16.83 | 36.8 |
| Zm00001d046662_P001 | Maize | cytosol | 5.17 | 16.03 |
Protein Annotations
| EntrezGene:100852578 | wikigene:100852578 | MapMan:19.2.2.8.1.5 | InterPro:ARM-type_fold | ProteinID:CCB55002 | ProteinID:CCB55002.1 |
| UniProt:F6HJZ9 | EMBL:FN595990 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005886 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010051 | GO:GO:0010228 | GO:GO:0010265 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0030312 | EntrezGene:LOC100852578 |
| wikigene:LOC100852578 | PFAM:PF08623 | PANTHER:PTHR12696 | PANTHER:PTHR12696:SF0 | SUPFAM:SSF48371 | InterPro:TATA-bd_TIP120 |
| TIGR:TC59654 | UniParc:UPI0001985B1F | ArrayExpress:VIT_12s0035g01840 | EnsemblPlantsGene:VIT_12s0035g01840 | EnsemblPlants:VIT_12s0035g01840.t01 | unigene:Vvi.2462 |
| RefSeq:XP_003633418 | RefSeq:XP_003633418.1 | RefSeq:XP_010657910.1 | RefSeq:XP_010657911.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:-:22037108..22080984
Molecular Weight (calculated)
134458.0 Da
IEP (calculated)
5.966
GRAVY (calculated)
-0.001
Length
1218 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANLAITSIL EKMTGKDKDY RYMATSDLLN ELNKEGFRAD ADLEIKLSNI VLQQLDDAAG DVSGLAVKCL APLVKKVSET RLVEMTNKLC DKLLNGKDQH
0101: RDIASIALKT IVSEVTTSAV AQCVLVSLSP QLIKGITSPG MTTEMKCECL DILCDVLHKF GNLMATDHEL LLGALLSQLS SNQASVRKKT VSCIASLASS
0201: LSDDLLAKAT VEVVRNLRSK GVKPEMTRTN IQMIGALSRA VGYRFGSHLG DTVPVLINYC TSASENDEEL REYSLQALES FLLRCPRDIS SYCDEILHLT
0301: LEYLSYDPNF TDNMEEDTDD ENHEEEEDDE SATEYTDDED VSWKVRRAAA KCLAALIVSR PEMLSKLYEE ACPKLIDRFK EREENVKMDV FNTFIELLRQ
0401: TGNVTKGQTD MNELSPRWLL KQEVPKIVKS INRQLREKTI KTKVGAFSVL KELVVVLPDC LADHIGSLIS GIEKALSDKS STSNLKIEAL IFTRLVLASH
0501: SPSVFHPYIK ALSSPVLSAV GERYYKVTAE ALRVCGELVR VVRPNIEGYG FDFKPYVHPI YNAIMTRLTN QDQDQEVKEC AISCMGLLVS TFGDNLRAEL
0601: PACLPVLVDR MGNEITRLTA VKAFAVIATS PLNIDLSCVL EHVIAELTAF LRKANRALRQ ATLGTLNSLI VAYGDKIGSS AYEVIIVELS SLISDSDLHM
0701: TALALELCCT LMADKRASPN VGLAVRNKVL PQALTLIKSS LLQGQALMAL QNFFATLVYS ANTSFDALLD SLLSSAKPSP QSGGVAKQAL CSIAQCVAVL
0801: CLAAGDQKCS TTVKMLTDIL RDDSSSNSAK QHLALLCLGE IGRRKDLSSH AHIENIVIES FQSPFEEIKS AASYALGNIA VGNLSKYLPF ILDQIDNQQK
0901: KQYLLLHSLK EVIVRQSVDK AEFQDSSVEK ILKLLFNHCE SEEEGVRNVV AECLGKIALI EPAKLVPALK VRTASPAAFT RATVVIAVKY SIVERPEKID
1001: EIIYPEISSF LMLIKDHDRH VRRAAVLALS TAAHNKPNLI KGLLPELLPL LYDQTIVKQE LIRTVDLGPF KHIVDDGLEL RKAAFECVDT LLDSCLDQVN
1101: PSSFIVPYLK SGLDDHYDVK MPCHLILSKL ADKCPSAVLA VLDSLVDPLL KTINFKPKQD AVKQEVDRNE DMIRSALRAI ASLNRISGGD CSLKFKHLMN
1201: EISKSSTLWE KYHSIRNE
0101: RDIASIALKT IVSEVTTSAV AQCVLVSLSP QLIKGITSPG MTTEMKCECL DILCDVLHKF GNLMATDHEL LLGALLSQLS SNQASVRKKT VSCIASLASS
0201: LSDDLLAKAT VEVVRNLRSK GVKPEMTRTN IQMIGALSRA VGYRFGSHLG DTVPVLINYC TSASENDEEL REYSLQALES FLLRCPRDIS SYCDEILHLT
0301: LEYLSYDPNF TDNMEEDTDD ENHEEEEDDE SATEYTDDED VSWKVRRAAA KCLAALIVSR PEMLSKLYEE ACPKLIDRFK EREENVKMDV FNTFIELLRQ
0401: TGNVTKGQTD MNELSPRWLL KQEVPKIVKS INRQLREKTI KTKVGAFSVL KELVVVLPDC LADHIGSLIS GIEKALSDKS STSNLKIEAL IFTRLVLASH
0501: SPSVFHPYIK ALSSPVLSAV GERYYKVTAE ALRVCGELVR VVRPNIEGYG FDFKPYVHPI YNAIMTRLTN QDQDQEVKEC AISCMGLLVS TFGDNLRAEL
0601: PACLPVLVDR MGNEITRLTA VKAFAVIATS PLNIDLSCVL EHVIAELTAF LRKANRALRQ ATLGTLNSLI VAYGDKIGSS AYEVIIVELS SLISDSDLHM
0701: TALALELCCT LMADKRASPN VGLAVRNKVL PQALTLIKSS LLQGQALMAL QNFFATLVYS ANTSFDALLD SLLSSAKPSP QSGGVAKQAL CSIAQCVAVL
0801: CLAAGDQKCS TTVKMLTDIL RDDSSSNSAK QHLALLCLGE IGRRKDLSSH AHIENIVIES FQSPFEEIKS AASYALGNIA VGNLSKYLPF ILDQIDNQQK
0901: KQYLLLHSLK EVIVRQSVDK AEFQDSSVEK ILKLLFNHCE SEEEGVRNVV AECLGKIALI EPAKLVPALK VRTASPAAFT RATVVIAVKY SIVERPEKID
1001: EIIYPEISSF LMLIKDHDRH VRRAAVLALS TAAHNKPNLI KGLLPELLPL LYDQTIVKQE LIRTVDLGPF KHIVDDGLEL RKAAFECVDT LLDSCLDQVN
1101: PSSFIVPYLK SGLDDHYDVK MPCHLILSKL ADKCPSAVLA VLDSLVDPLL KTINFKPKQD AVKQEVDRNE DMIRSALRAI ASLNRISGGD CSLKFKHLMN
1201: EISKSSTLWE KYHSIRNE
0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE
Arabidopsis Description
CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.