Factsheet for Bra026586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000874.1-P
Bra003518.1-P
Bra007720.1-P
Bra014378.1-P
Bra017569.1-P
Bra018126.1-P
Bra022023.1-P
Bra025031.1-P
Bra026812.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	Bra026812.1-P	AT1G14687.1	21798944
AT2G02560.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G02560.1	Bra003518.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra007720.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra014378.1-P	AT3G62980.1	18550827
AT2G02560.1	Bra000874.1-P	AT4G02570.1	15208391
AT2G02560.1	Bra036257.1-P	AT4G02570.1	15208391
AT2G02560.1	Bra000874.1-P	AT4G02570.1	15208392
AT2G02560.1	Bra036257.1-P	AT4G02570.1	15208392
AT2G02560.1	Bra000874.1-P	AT4G02570.1	18550827
AT2G02560.1	Bra036257.1-P	AT4G02570.1	18550827
AT2G02560.1	Bra000638.1-P	AT4G08150.1	21798944
AT2G02560.1	Bra017569.1-P	AT5G46210.1	16844902
AT2G02560.1	Bra022023.1-P	AT5G46210.1	16844902
AT2G02560.1	Bra025031.1-P	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09359	Canola	cytosol	99.92	99.92
Bra024815.1-P	Field mustard	cytosol	95.97	95.5
AT2G02560.1	Thale cress	cytosol	95.56	95.41
VIT_12s0035g01840.t01	Wine grape	cytosol	82.74	82.68
KRH01878	Soybean	endoplasmic reticulum	82.33	82.27
KRH51281	Soybean	endoplasmic reticulum	82.25	82.25
Solyc01g103010.2.1	Tomato	cytosol	79.95	79.95
GSMUA_Achr10P...	Banana	cytosol	78.14	77.25
HORVU5Hr1G011280.4	Barley	cytosol, endoplasmic reticulum, peroxisome	40.18	76.89
EES06334	Sorghum	cytosol	76.83	76.7
Os02t0167700-01	Rice	plasma membrane	76.42	76.35
TraesCS5D01G057500.1	Wheat	cytosol	76.17	76.05
TraesCS5A01G046900.1	Wheat	golgi	76.09	75.96
TraesCS5B01G051900.1	Wheat	cytosol	76.01	75.88
TraesCS2D01G036800.1	Wheat	cytosol	75.51	75.39
TraesCS2A01G037800.2	Wheat	cytosol, unclear	75.43	75.31
TraesCS2B01G051000.1	Wheat	cytosol, golgi	75.35	75.23
HORVU2Hr1G005650.6	Barley	cytosol	75.27	75.14
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	19.72	73.85
HORVU0Hr1G010280.1	Barley	plastid	6.33	72.64
TraesCS5D01G419100.1	Wheat	nucleus	58.5	67.11
Os02t0169800-01	Rice	cytosol, plasma membrane	17.09	66.24
HORVU5Hr1G059250.1	Barley	cytosol	3.78	65.71
Zm00001d049167_P001	Maize	plastid	14.71	64.62
HORVU1Hr1G041480.1	Barley	cytosol	4.68	64.04
HORVU7Hr1G036210.1	Barley	endoplasmic reticulum, plastid	3.62	62.86
TraesCS5A01G409300.1	Wheat	cytosol	48.73	47.48
HORVU1Hr1G041490.1	Barley	cytosol	2.22	47.37
Zm00001d050298_P001	Maize	cytosol	15.78	39.59
Zm00001d027974_P002	Maize	plastid	16.43	35.91
Zm00001d046662_P001	Maize	cytosol	5.09	15.78

Protein Annotations

EnsemblPlants:Bra026586.1	EnsemblPlants:Bra026586.1-P	EnsemblPlantsGene:Bra026586	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold
InterPro:TATA-bd_TIP120	ncoils:Coil	PANTHER:PTHR12696	PANTHER:PTHR12696:SF0	PFAM:PF08623	SEG:seg
SUPFAM:SSF48371	UniParc:UPI00025468B4	UniProt:M4ECS6	MapMan:19.2.2.8.1.5	:	:

Description

AT2G02560 (E=0.0) CAND1, ATCAND1, ETA2, TIP120, HVE | CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding

Coordinates

chrA02:-:20444238..20451073

Molecular Weight (calculated)

134374.0 Da

IEP (calculated)

5.924

GRAVY (calculated)

0.004

Length

1217 amino acids

Sequence
(BLAST)

0001: MANLQVSGII EKMTGKDKDF RYMATSDLLN ELNKESFKLD TDLEMRLSSI ILKQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC EKLLHGKDQH
0101: RDTASIALRT VVAQVAPSLA PSILVTLTPQ MIGGISGEGL SSGIKCECLE IMCDVVQKYG SLMADDHNKL LNALLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV QVVKNLSNKN AKSEITRTNI QMIGALSRSV GYRFGTHLGN TVPVLIKYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDDE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMISKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSAKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTQGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLGAELP
0601: SCLPVLVDRM GNEITRLTAV KAFAVIATSP LHIDLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIDSDA YEVIVVELSS LICVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLALQ GFFEALVYHA NTSFYTLLDS LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLIEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LNQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALKV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPEISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLSELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL LDSCLDQLNP
1101: SSFIIPFLKS GLEDHYDLKM ICHLILSLLA DKCPSAVLAV LDSLVEPLQK TINFKPKQDA VKQEHDRNED MIRSALRAIS SLDRISGVDY SHKFKSLMAE
1201: MKRSESLWGK YQTIRNE

Best Arabidopsis Sequence Match ( AT2G02560.2 )
(BLAST)

0001: MANLQVSGIL EKMTGKDKDY RYMATSDLLN ELNKDSFKID LDLEVRLSSI ILQQLDDVAG DVSGLAVKCL APLVKKVGEE RIVEMTNKLC DKLLHGKDQH
0101: RDTASIALRT VVAQIAPTLA PSILVTLTPQ MIGGISGQGM SSGIKCECLE IMCDVVQKYG SLMTDDHEKL LNTLLLQLGC NQATVRKKTV TCIASLASSL
0201: SDDLLAKATV EVVKNLSNRN AKSEITRTNI QMIGALCRAV GYRFGTHLGN TVPVLINYCT SASENDEELR EYSLQALESF LLRCPRDISP YCDEILNLTL
0301: EYISYDPNFT DNMEEDTDNE TLEDEEDDES ANEYTDDEDA SWKVRRAAAK CLAGLIVSRS EMLTKVYQEA CPKLIDRFKE REENVKMDVF NTFIDLLRQT
0401: GNVTKGQTDT DESSPKWLLK QEVSKIVKSI NRQLREKSVK TKVGAFSVLR ELVVVLPDCL ADHIGSLVPG IERALNDKSS TSNLKIEALV FTKLVLASHA
0501: PPVFHPYIKA LSSPVLAAVG ERYYKVTAEA LRVCGELVRV VRPSTAGMGF DFKPFVHPIY NAIMSRLTNQ DQDQEVKECA ITCMGLVIST FGDQLRAELP
0601: SCLPVLVDRM GNEITRLTAV KAFSVIATSP LHINLSCVLD HLIAELTGFL RKANRVLRQA TLITMNTLVT AYGDKIGSEA YEVILVELSS LISVSDLHMT
0701: ALALELCCTL MTGKSCSENI SLAVRNKVLP QALTLVKSPL LQGQALLDLQ KFFEALVYHA NTSFYTLLES LLSCAKPSPQ SGGVPKQALY SIAQCVAVLC
0801: LAAGDKNCSS TVKMLMEILK DDSGTNSAKQ HLALLSLGEI GRRKDLSAHA GIETIVIESF QSPFEEIKSA ASYALGNIAV GNLSNYLPFI LDQIDNQQKK
0901: QYILLHSLKE VIVRQSVDKA DFQNSSVEKI LALLFNHCES EEEGVRNVVA ECLGKMALIE PEKLVPALQV RTTSPAAFTR ATVVTAVKYS VVERPEKLDE
1001: IIFPQISSFL MLIKDGDRHV RRAAVSALST FAHYKPNLIK GLLPELLPLL YDQTVIKKEL IRTVDLGPFK HVVDDGLELR KAAFECVFTL VDSCLDQVNP
1101: SSFIVPFLKS GLEDHYDLKM LCHLILSLLA DKCPSAVLAV LDSLVEPLHK TISFKPKQDA VKQEHDRNED MIRSALRAIS SLDRINGVDY SHKFKGLMGD
1201: MKRSVPLWEK FQTIRNE

Arabidopsis Description

CAND1Cullin-associated NEDD8-dissociated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5Y6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.