Factsheet for Zm00001d050298_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d010863_P001
Zm00001d013116_P002
Zm00001d013559_P001
Zm00001d018045_P001
Zm00001d018742_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d034361_P001
Zm00001d037221_P001
Zm00001d042193_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02560.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT2G02560.1	Zm00001d010863_P001	AT3G62980.1	18550827
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	15208391
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	15208392
AT2G02560.1	Zm00001d042193_P001	AT4G02570.1	18550827
AT2G02560.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT2G02560.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT2G02560.1	Zm00001d013116_P002	AT5G46210.1	16844902
AT2G02560.1	Zm00001d034361_P001	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049167_P001	Maize	plastid	30.52	53.43
Zm00001d046662_P001	Maize	cytosol	22.68	27.99
Zm00001d027974_P002	Maize	plastid	28.45	24.78
Zm00001d053813_P002	Maize	mitochondrion	47.84	18.27
KRH01878	Soybean	endoplasmic reticulum	42.89	17.08
KRH51281	Soybean	endoplasmic reticulum	42.68	17.01
VIT_12s0035g01840.t01	Wine grape	cytosol	42.27	16.83
Solyc01g103010.2.1	Tomato	cytosol	40.21	16.02
Bra026586.1-P	Field mustard	cytosol	39.59	15.78
CDY09359	Canola	cytosol	39.59	15.78
AT2G02560.1	Thale cress	cytosol	39.59	15.75
Bra024815.1-P	Field mustard	cytosol	39.38	15.62
CDY41685	Canola	cytosol	39.38	15.53
CDY03047	Canola	cytosol	39.18	15.48
CDY45206	Canola	cytosol	37.94	15.16
KRH75237	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	5.36	8.0

Protein Annotations

Gene3D:1.20.1560.10	Gene3D:1.25.10.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6Q0W1	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ProteinID:AQK52272.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Aquarius_N
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR011989
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	PFAM:PF16399	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF272	SUPFAM:SSF48371	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI0008424370	EnsemblPlantsGene:Zm00001d050298	EnsemblPlants:Zm00001d050298_P001	EnsemblPlants:Zm00001d050298_T001	:	:

Description

Cullin-associated NEDD8-dissociated protein 1

Coordinates

chr4:-:79606092..79609886

Molecular Weight (calculated)

53495.4 Da

IEP (calculated)

6.180

GRAVY (calculated)

0.034

Length

485 amino acids

Sequence
(BLAST)

001: MDIFKTFIEL LRQTGNVTKG QGDIDESSPR WLLKQEVPKV VKSINRQLRE KSIKTKVGAF SVLKELVVVL PDCLADHFGS LVPGIEKALN DKSSTSNLKI
101: EALVLTRLVM ASHSPSVFHP YIKALSAPIL SVIRDRYYKV TTEALRVCGE LVRVLRPNLE KTVVDFEPYI GPIYNAILGR LANQDQDQWM NMPNLLEVID
201: FKDTFLDANH VQQSFPDYQE MYEDASQVAV DAVGSIRTVA SFCAEKIVVA AYRDKCEALR KQGIRNGVIG GLGYGFSFLM LFFTYGLCFY VGAQFVRQGK
301: TTFPDVFKVF FALVLAAIGV SQASALASDA TKARDSAISI FSVLDRESKI DSSSGDGMTL EDVSGKIDFR NVSFKYPLCL DVQIFSDFTL RIPSGKTVAL
401: VRESGSGKST IIALLERLYD PDSGRISQDG VECTQMTNLT CSYWVQCPSG SSYGLTETCA GAAFTEWDDT SVGRVGPPLP CCYVK

Best Arabidopsis Sequence Match ( AT1G02520.1 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.