Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0673000-00 | Rice | nucleus | 20.22 | 97.4 |
| EER91090 | Sorghum | nucleus | 81.4 | 90.42 |
| Zm00001d013559_P001 | Maize | cytosol, mitochondrion, nucleus | 35.04 | 79.75 |
| TraesCS4A01G292200.1 | Wheat | nucleus | 60.38 | 70.22 |
| HORVU4Hr1G003360.1 | Barley | nucleus | 60.11 | 69.47 |
| TraesCS4B01G021900.2 | Wheat | nucleus | 60.38 | 68.92 |
| TraesCS4D01G019600.1 | Wheat | nucleus | 60.38 | 65.88 |
| CDY34012 | Canola | nucleus | 28.57 | 54.92 |
| GSMUA_Achr10P... | Banana | nucleus | 32.61 | 46.54 |
| Zm00001d018742_P001 | Maize | nucleus | 42.32 | 44.73 |
| Zm00001d007842_P002 | Maize | nucleus | 41.78 | 43.06 |
| Solyc04g077210.2.1 | Tomato | nucleus | 40.7 | 42.54 |
| PGSC0003DMT400012712 | Potato | nucleus | 40.16 | 41.39 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 41.24 | 41.35 |
| Zm00001d033859_P002 | Maize | nucleus | 39.08 | 40.39 |
| Zm00001d035439_P001 | Maize | nucleus | 32.34 | 40.27 |
| KRH15482 | Soybean | nucleus | 41.24 | 39.74 |
| KRG88661 | Soybean | nucleus | 41.24 | 39.53 |
| Zm00001d040611_P002 | Maize | nucleus | 31.27 | 39.32 |
| KRH61471 | Soybean | nucleus | 37.74 | 38.78 |
| Zm00001d010948_P001 | Maize | nucleus | 31.81 | 38.44 |
| Bra000638.1-P | Field mustard | nucleus | 39.89 | 38.24 |
| AT4G08150.1 | Thale cress | nucleus | 40.7 | 37.94 |
| Zm00001d033861_P001 | Maize | nucleus | 36.39 | 37.5 |
| CDX83145 | Canola | nucleus | 39.89 | 36.82 |
| CDY68624 | Canola | nucleus | 30.73 | 32.66 |
| Zm00001d034212_P001 | Maize | nucleus | 40.7 | 31.2 |
| Zm00001d046568_P001 | Maize | nucleus | 23.45 | 27.53 |
| Zm00001d053749_P002 | Maize | nucleus | 23.45 | 27.27 |
| Zm00001d015549_P001 | Maize | nucleus | 23.45 | 26.77 |
| Zm00001d027431_P002 | Maize | nucleus | 21.29 | 25.48 |
| Zm00001d048471_P001 | Maize | nucleus | 21.02 | 24.53 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100193050 | MapMan:15.5.3.4 | UniProt:A0A1D6KYU8 | InterPro:ELK_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | ProteinID:ONM07559.1 | PFAM:PF03789 |
| PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF106 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI000845975B | EnsemblPlantsGene:Zm00001d033404 | EnsemblPlants:Zm00001d033404_P002 | EnsemblPlants:Zm00001d033404_T002 | SEG:seg |
Description
Homeobox-transcription factor 110Homeobox protein knotted-1-like 1
Coordinates
chr1:+:262057150..262063813
Molecular Weight (calculated)
41007.1 Da
IEP (calculated)
7.321
GRAVY (calculated)
-0.695
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSSIPQTIK YPQIARWLAR MEKQLPALTG GSKAATTTPF YLALDHRAAA TSSSPPAEAP TLPPSAAAVS DPSRQSNSDR GSEIIKAKIM SHPLYPALLR
101: AFIDCRKVGA PLEIVGRLSA LADDVETNSD GRQEEQPADP ELDQFMEIYC HMLVRYRQEL TRPIQEADEF FKSMEAQIDS FSLAVRQDKE YSGAASGKQI
201: FVDDNGYEEG GGSSDEDEQE TVDLGGLPVP ETGSPSGEGK ELKNHLLNKY SGYLSSLWRE LSRKKKKGKL PRDARQKLLH WWQLHYRWPY PSELEKAALA
301: ESTGLDAKQI NNWFINQRKR HWKPAPPTMA LGTPDYRMGQ HGGGASSSSA SAGLRVQGQY FTGGSSYPRG P
101: AFIDCRKVGA PLEIVGRLSA LADDVETNSD GRQEEQPADP ELDQFMEIYC HMLVRYRQEL TRPIQEADEF FKSMEAQIDS FSLAVRQDKE YSGAASGKQI
201: FVDDNGYEEG GGSSDEDEQE TVDLGGLPVP ETGSPSGEGK ELKNHLLNKY SGYLSSLWRE LSRKKKKGKL PRDARQKLLH WWQLHYRWPY PSELEKAALA
301: ESTGLDAKQI NNWFINQRKR HWKPAPPTMA LGTPDYRMGQ HGGGASSSSA SAGLRVQGQY FTGGSSYPRG P
001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
Arabidopsis Description
KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.