Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0673000-00 | Rice | nucleus | 22.06 | 97.4 |
| TraesCS4A01G292200.1 | Wheat | nucleus | 90.88 | 96.87 |
| HORVU4Hr1G003360.1 | Barley | nucleus | 89.71 | 95.02 |
| TraesCS4B01G021900.2 | Wheat | nucleus | 90.29 | 94.46 |
| EER91090 | Sorghum | nucleus | 66.18 | 67.37 |
| Zm00001d033404_P002 | Maize | nucleus | 65.88 | 60.38 |
| Zm00001d013559_P001 | Maize | cytosol, mitochondrion, nucleus | 27.94 | 58.28 |
| CDY34012 | Canola | nucleus | 31.18 | 54.92 |
| TraesCS4D01G019800.1 | Wheat | nucleus | 50.29 | 53.11 |
| TraesCS4D01G019900.1 | Wheat | nucleus | 48.24 | 50.31 |
| GSMUA_Achr10P... | Banana | nucleus | 35.88 | 46.92 |
| TraesCS2D01G256400.1 | Wheat | nucleus | 45.0 | 44.09 |
| TraesCS5D01G415900.1 | Wheat | nucleus | 43.53 | 43.66 |
| Solyc04g077210.2.1 | Tomato | nucleus | 44.71 | 42.82 |
| PGSC0003DMT400012712 | Potato | nucleus | 44.41 | 41.94 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 45.29 | 41.62 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 42.65 | 40.06 |
| KRH15482 | Soybean | nucleus | 45.0 | 39.74 |
| KRG88661 | Soybean | nucleus | 44.71 | 39.28 |
| KRH61471 | Soybean | nucleus | 41.18 | 38.78 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 34.41 | 38.24 |
| AT4G08150.1 | Thale cress | nucleus | 44.41 | 37.94 |
| Bra000638.1-P | Field mustard | nucleus | 42.94 | 37.73 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 32.94 | 36.6 |
| CDX83145 | Canola | nucleus | 42.94 | 36.32 |
| CDY68624 | Canola | nucleus | 32.35 | 31.52 |
| TraesCS6D01G134800.1 | Wheat | nucleus | 16.76 | 27.54 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 23.82 | 26.21 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 21.47 | 23.47 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF106 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS4D01G019600 | EnsemblPlants:TraesCS4D01G019600.1 |
| TIGR:cd00086 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:8402337..8412426
Molecular Weight (calculated)
38122.8 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.750
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQFPLLPSG SKANTSTPLY LTLDNTTSGA STSPVPEPAP APPEPSTHSN HDRGTDTVKA KIMSHPLYPA LLTAFIECQK VRTSWPPGLI LRTHVILRLM
101: VGAPPEIVGR LSALAGDLHS DPGDRRQDPV PDPELDEFME TYCDVLVRYK QELTRPIQEA DQFFRAMEAQ MESFTLDDQS YEGGGSSEDE QEAGDVGGLP
201: EITSHCAEDK ELKSHLLNKY SGYLSSLWRD LSKKKKKGKL PRDARQKLLH WWQLHYRWPY PSELEKAALA ESTRLDAKQI NNWFINQRKR HWKPTPPAME
301: YMSQQQHPHP YGGASSSSSA PFRTTDGHYF AGGSAYPRGP
101: VGAPPEIVGR LSALAGDLHS DPGDRRQDPV PDPELDEFME TYCDVLVRYK QELTRPIQEA DQFFRAMEAQ MESFTLDDQS YEGGGSSEDE QEAGDVGGLP
201: EITSHCAEDK ELKSHLLNKY SGYLSSLWRD LSKKKKKGKL PRDARQKLLH WWQLHYRWPY PSELEKAALA ESTRLDAKQI NNWFINQRKR HWKPTPPAME
301: YMSQQQHPHP YGGASSSSSA PFRTTDGHYF AGGSAYPRGP
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.