Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G258000.1 | Wheat | plastid | 92.57 | 93.84 |
| TraesCS6B01G267100.1 | Wheat | plastid | 93.24 | 92.62 |
| HORVU6Hr1G065900.1 | Barley | mitochondrion, plastid | 89.86 | 89.56 |
| Os02t0679700-01 | Rice | plastid | 62.5 | 65.84 |
| OQU85631 | Sorghum | plastid | 58.11 | 55.84 |
| Zm00001d017606_P001 | Maize | plastid | 54.05 | 54.79 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 29.05 | 49.43 |
| Os01t0831800-00 | Rice | plastid | 43.92 | 46.93 |
| GSMUA_Achr11P... | Banana | plastid | 24.66 | 42.44 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 26.35 | 39.8 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 27.36 | 39.13 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 32.09 | 38.62 |
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 47.3 | 36.65 |
| Solyc11g068780.1.1 | Tomato | cytosol | 15.88 | 34.31 |
| PGSC0003DMT400050511 | Potato | cytosol | 15.88 | 33.81 |
| KRG96237 | Soybean | mitochondrion | 20.95 | 32.46 |
| AT3G52525.1 | Thale cress | plastid | 17.23 | 32.08 |
| KRH32810 | Soybean | mitochondrion | 18.92 | 31.64 |
| KRH67981 | Soybean | mitochondrion | 20.27 | 31.58 |
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 23.31 | 30.53 |
| KRH72226 | Soybean | mitochondrion | 17.91 | 30.46 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 18.92 | 30.11 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 18.58 | 30.05 |
| KRH22646 | Soybean | mitochondrion, nucleus | 17.91 | 28.8 |
| CDY43753 | Canola | nucleus | 17.91 | 28.49 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 17.91 | 28.49 |
| Bra017266.1-P | Field mustard | nucleus | 17.91 | 28.49 |
| CDX75076 | Canola | nucleus | 17.91 | 28.49 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 17.57 | 28.26 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 16.89 | 28.09 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 17.23 | 28.02 |
| KRH26670 | Soybean | mitochondrion | 17.57 | 27.96 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 17.57 | 27.51 |
| KRH30374 | Soybean | nucleus, plastid | 16.89 | 25.38 |
| KRH25295 | Soybean | nucleus, plastid | 16.55 | 25.13 |
| TraesCS3D01G368500.1 | Wheat | plastid | 16.89 | 22.03 |
| TraesCS1D01G275100.1 | Wheat | plastid | 15.2 | 19.65 |
| TraesCS4D01G262000.1 | Wheat | mitochondrion | 15.54 | 16.55 |
| TraesCS3D01G289200.1 | Wheat | nucleus | 14.86 | 14.86 |
| TraesCS2D01G390300.1 | Wheat | mitochondrion | 12.5 | 14.51 |
| TraesCS2D01G105600.1 | Wheat | nucleus | 13.51 | 14.49 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 16.22 | 14.46 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 16.55 | 13.96 |
| TraesCS4D01G171100.1 | Wheat | nucleus, plastid | 13.85 | 13.44 |
| TraesCS3D01G339100.1 | Wheat | nucleus | 14.53 | 11.72 |
| TraesCS1D01G340300.1 | Wheat | nucleus | 13.51 | 11.59 |
| TraesCS1D01G299500.1 | Wheat | nucleus | 14.19 | 11.29 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G239400.1 | EnsemblPlantsGene:TraesCS6D01G239400 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF6 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr6D:+:340212237..340213289
Molecular Weight (calculated)
31491.0 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.507
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSPGISVKK RHGGAGFALG CGCKDAKSVS VISASPSPSG AGTPTTTETR RRGGRANPSA STTTDTLTSA SSSSLLWEDA VAEFECGDDG QFKMESSAAT
101: QSFSGLLREL NELEQSVVSW GRKSHRSRDD KKASSPPLEH KQATMKSGVK GGDVTTGGAK DRHVGDSVEP GTVGACVEVG LDGSVAVVKQ SEDPLSDFRQ
201: SMVQMIVENG IIAGEELRQM LRRFLTLNAP HHHDVILRAF AEIWDAVFSA SYVPAPAAAP PRKYTRREEP AAGRPPMPPR TPPRHHHSPS PSAWRV
101: QSFSGLLREL NELEQSVVSW GRKSHRSRDD KKASSPPLEH KQATMKSGVK GGDVTTGGAK DRHVGDSVEP GTVGACVEVG LDGSVAVVKQ SEDPLSDFRQ
201: SMVQMIVENG IIAGEELRQM LRRFLTLNAP HHHDVILRAF AEIWDAVFSA SYVPAPAAAP PRKYTRREEP AAGRPPMPPR TPPRHHHSPS PSAWRV
001: MTTGKSKKKK MVLKAVSVVD IGCGNCKFPS LSSFFNPSPK KPRLYSSNYG HCHSSTPTTA SSSSAVPSTS HWFSDTSSSS ATPSAAAVAV EKDSDDPYLD
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
101: FRQSMLQMIL ENEIYSKNDL RELLHCFLSL NEPYHHGIII RAFSEIWDGV FSAAKRRGDV QESPLVHRHG SRASHRNHYH RSK
Arabidopsis Description
Ovate family protein [Source:UniProtKB/TrEMBL;Acc:B3H6R4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.