Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012712 | |
| PGSC0003DMT400058528 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52525.1 | PGSC0003DMT400058528 | AT1G62990.1 | 15781858 |
| AT3G52525.1 | PGSC0003DMT400012712 | AT4G08150.1 | 15781858 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g082050.1.1 | Tomato | mitochondrion | 87.83 | 93.26 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 68.25 | 70.11 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 53.44 | 54.3 |
| KRG96237 | Soybean | mitochondrion | 50.79 | 50.26 |
| KRH72226 | Soybean | mitochondrion | 46.03 | 50.0 |
| KRH67981 | Soybean | mitochondrion | 50.26 | 50.0 |
| KRH32810 | Soybean | mitochondrion | 46.56 | 49.72 |
| AT3G52525.1 | Thale cress | plastid | 41.8 | 49.69 |
| PGSC0003DMT400050511 | Potato | cytosol | 34.92 | 47.48 |
| CDY43753 | Canola | nucleus | 44.44 | 45.16 |
| Bra017266.1-P | Field mustard | nucleus | 44.44 | 45.16 |
| CDX75076 | Canola | nucleus | 43.39 | 44.09 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 42.86 | 43.55 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 41.8 | 43.17 |
| GSMUA_Achr9P02660_001 | Banana | mitochondrion | 30.69 | 29.29 |
| GSMUA_Achr6P19470_001 | Banana | nucleus | 26.98 | 27.42 |
| GSMUA_Achr6P18350_001 | Banana | mitochondrion | 31.22 | 27.31 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.22 | 26.58 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 29.1 | 26.57 |
| TraesCS3A01G376000.1 | Wheat | plastid | 31.22 | 26.34 |
| HORVU3Hr1G083700.1 | Barley | plastid | 31.22 | 26.34 |
| TraesCS3B01G408300.1 | Wheat | plastid | 31.22 | 26.11 |
| TraesCS3D01G368500.1 | Wheat | plastid | 30.69 | 25.55 |
| Os01t0864000-01 | Rice | mitochondrion, plastid | 30.69 | 25.44 |
| GSMUA_Achr11P... | Banana | plastid | 22.75 | 25.0 |
| EES03931 | Sorghum | plastid | 31.22 | 25.0 |
| Zm00001d042752_P001 | Maize | nucleus, plastid | 31.22 | 23.98 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 31.22 | 23.98 |
| TraesCS1A01G185400.1 | Wheat | mitochondrion | 30.69 | 23.58 |
| TraesCS1B01G193300.1 | Wheat | mitochondrion | 30.69 | 23.58 |
| HORVU1Hr1G049440.1 | Barley | mitochondrion | 30.69 | 23.29 |
| Zm00001d012282_P001 | Maize | nucleus, plastid | 30.16 | 23.08 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 21.16 | 22.99 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 23.81 | 22.96 |
| Zm00001d029718_P001 | Maize | mitochondrion | 31.22 | 22.69 |
| TraesCS1B01G284700.1 | Wheat | plastid | 26.98 | 22.57 |
| TraesCS1D01G275100.1 | Wheat | plastid | 26.98 | 22.27 |
| Os10t0532600-01 | Rice | mitochondrion | 30.69 | 22.05 |
| Zm00001d038283_P001 | Maize | nucleus | 26.45 | 21.93 |
| TraesCS1A01G275500.1 | Wheat | nucleus, plastid | 26.45 | 21.83 |
| EES18304 | Sorghum | nucleus, plastid | 26.45 | 21.83 |
| Os05t0440900-00 | Rice | plastid | 26.45 | 21.64 |
| HORVU1Hr1G074020.1 | Barley | nucleus, plastid | 25.93 | 21.59 |
| EER94592 | Sorghum | mitochondrion | 31.75 | 21.28 |
| Zm00001d047346_P001 | Maize | mitochondrion | 30.16 | 20.73 |
| PGSC0003DMT400095058 | Potato | plastid | 23.81 | 18.99 |
| Os02t0679700-01 | Rice | plastid | 28.04 | 18.86 |
| PGSC0003DMT400000838 | Potato | nucleus | 27.51 | 18.57 |
| Zm00001d027453_P001 | Maize | plastid | 23.28 | 17.81 |
| EER92948 | Sorghum | plastid | 23.81 | 17.65 |
| TraesCS6D01G239400.1 | Wheat | plastid | 27.51 | 17.57 |
| OQU85631 | Sorghum | plastid | 28.57 | 17.53 |
| HORVU6Hr1G065900.1 | Barley | mitochondrion, plastid | 27.51 | 17.51 |
| Zm00001d017606_P001 | Maize | plastid | 26.98 | 17.47 |
| TraesCS6A01G258000.1 | Wheat | plastid | 26.98 | 17.47 |
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 20.63 | 17.26 |
| TraesCS6B01G267100.1 | Wheat | plastid | 26.98 | 17.11 |
| TraesCS5A01G492400.1 | Wheat | nucleus | 20.63 | 16.74 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 31.22 | 15.78 |
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 31.75 | 15.71 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 31.22 | 15.57 |
| Zm00001d026061_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 30.69 | 15.14 |
| HORVU4Hr1G083150.1 | Barley | plastid | 20.11 | 15.02 |
| Os04t0577700-01 | Rice | nucleus | 29.1 | 14.99 |
| Zm00001d002594_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 30.69 | 14.61 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 27.51 | 14.48 |
| EES11304 | Sorghum | plastid | 31.22 | 14.43 |
| PGSC0003DMT400033048 | Potato | mitochondrion, nucleus, plastid | 25.4 | 13.71 |
| Os03t0126450-00 | Rice | nucleus | 23.28 | 13.06 |
| TraesCS4B01G319700.1 | Wheat | plastid | 20.63 | 12.79 |
| PGSC0003DMT400011286 | Potato | nucleus | 19.05 | 12.68 |
| PGSC0003DMT400045857 | Potato | mitochondrion | 26.45 | 12.59 |
| PGSC0003DMT400037629 | Potato | plastid | 27.51 | 12.32 |
| Os01t0831800-00 | Rice | plastid | 15.87 | 10.83 |
| PGSC0003DMT400078126 | Potato | nucleus | 19.58 | 10.54 |
| PGSC0003DMT400073252 | Potato | nucleus | 21.16 | 9.76 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072347 | EnsemblPlantsGene:PGSC0003DMG400028155 | EntrezGene:102586649 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C |
| PANTHER:PTHR33057 | PANTHER:PTHR33057:SF17 | PFAM:PF04844 | PFscan:PS51754 | PGSC:PGSC0003DMG400028155 | RefSeq:XP_006339319.1 |
| SEG:seg | TIGRFAMs:TIGR01568 | UniParc:UPI000296FBA7 | UniProt:M1CQ43 | MapMan:15.5.37 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028155]
Coordinates
chr10:-:56030393..56031156
Molecular Weight (calculated)
20710.3 Da
IEP (calculated)
7.985
GRAVY (calculated)
-0.412
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTKKRVIL RNVTVKLGCS SSCIRPKFSS IFHPKPRRHQ SADTAATFNH DKTPKIYSST NSPITTATTF SPSPTPSPAH YSSDAERAVQ GFGRIGGGSV
101: AVEKDSDDPY VDFRQSMLQM ILEKEIYSKD ELRELLNCFL QLNSPYYHGI IVRAFTEIWH CVFSVNPGVT GADSPFLESG GDDGGGGGW
101: AVEKDSDDPY VDFRQSMLQM ILEKEIYSKD ELRELLNCFL QLNSPYYHGI IVRAFTEIWH CVFSVNPGVT GADSPFLESG GDDGGGGGW
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.