Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G275100.1 | Wheat | plastid | 94.76 | 94.76 |
| TraesCS1B01G284700.1 | Wheat | plastid | 93.45 | 94.69 |
| HORVU1Hr1G074020.1 | Barley | nucleus, plastid | 86.46 | 87.22 |
| EES18304 | Sorghum | nucleus, plastid | 61.57 | 61.57 |
| Os05t0440900-00 | Rice | plastid | 60.7 | 60.17 |
| Zm00001d038283_P001 | Maize | nucleus | 58.52 | 58.77 |
| TraesCS3A01G376000.1 | Wheat | plastid | 52.4 | 53.57 |
| GSMUA_Achr6P19470_001 | Banana | nucleus | 34.06 | 41.94 |
| GSMUA_Achr9P02660_001 | Banana | mitochondrion | 30.57 | 35.35 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.44 | 32.43 |
| Solyc11g068780.1.1 | Tomato | cytosol | 18.78 | 31.39 |
| GSMUA_Achr6P18350_001 | Banana | mitochondrion | 29.26 | 31.02 |
| PGSC0003DMT400050511 | Potato | cytosol | 18.34 | 30.22 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 23.58 | 29.67 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 23.58 | 29.35 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 23.58 | 29.03 |
| KRH32810 | Soybean | mitochondrion | 22.27 | 28.81 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 21.83 | 28.09 |
| KRH67981 | Soybean | mitochondrion | 23.14 | 27.89 |
| KRH72226 | Soybean | mitochondrion | 20.96 | 27.59 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 21.83 | 27.32 |
| KRG96237 | Soybean | mitochondrion | 22.71 | 27.23 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 21.83 | 26.45 |
| CDX75076 | Canola | nucleus | 20.96 | 25.81 |
| AT3G52525.1 | Thale cress | plastid | 17.9 | 25.79 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 20.52 | 25.27 |
| Bra017266.1-P | Field mustard | nucleus | 20.52 | 25.27 |
| CDY43753 | Canola | nucleus | 20.52 | 25.27 |
| KRH26670 | Soybean | mitochondrion | 18.34 | 22.58 |
| TraesCS1A01G185400.1 | Wheat | mitochondrion | 23.14 | 21.54 |
| KRH22646 | Soybean | mitochondrion, nucleus | 17.03 | 21.2 |
| KRH25295 | Soybean | nucleus, plastid | 17.9 | 21.03 |
| KRH30374 | Soybean | nucleus, plastid | 17.9 | 20.81 |
| TraesCS5A01G492400.1 | Wheat | nucleus | 19.65 | 19.31 |
| TraesCS3A01G228900.1 | Wheat | nucleus | 24.45 | 16.87 |
| TraesCS2A01G392200.1 | Wheat | mitochondrion | 17.9 | 15.95 |
| TraesCS6A01G258000.1 | Wheat | plastid | 20.09 | 15.75 |
| TraesCS3A01G151800.1 | Wheat | nucleus, plastid | 23.58 | 15.3 |
| TraesCS4A01G041100.1 | Wheat | mitochondrion | 17.03 | 13.88 |
| TraesCS2A01G106000.1 | Wheat | nucleus | 16.59 | 13.62 |
| TraesCS3A01G345100.1 | Wheat | nucleus | 20.52 | 12.98 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 20.96 | 12.66 |
| TraesCS3A01G289400.1 | Wheat | nucleus | 15.28 | 11.82 |
| TraesCS1A01G300100.1 | Wheat | mitochondrion | 19.21 | 11.58 |
| TraesCS1A01G338100.1 | Wheat | cytosol | 16.16 | 10.79 |
| TraesCS4A01G136100.1 | Wheat | mitochondrion | 12.66 | 10.43 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G275500.1 | EnsemblPlantsGene:TraesCS1A01G275500 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF64 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr1A:+:469644610..469645299
Molecular Weight (calculated)
24902.3 Da
IEP (calculated)
8.944
GRAVY (calculated)
-0.552
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSPGGFSRR SGDSFLLPRP PPVTDVGCGC RTPRLLSSIY SSLMSRARGG GGRGTKPKSP HASSSSTATA FTSSTAGATT ATTASSLDDS WGLATYATNM
101: LYEDDPEARR QKQRTTTRTR RRRRQRNHGS GRRPERGVAV MARGEEVEEE EAAVAVEVES ATPYEDFRES MVAMVVEKEM YAWEDLNALL HGFLSLNSPR
201: NHPLILHAFA DLWAPRGGLF CPPSPCLGL
101: LYEDDPEARR QKQRTTTRTR RRRRQRNHGS GRRPERGVAV MARGEEVEEE EAAVAVEVES ATPYEDFRES MVAMVVEKEM YAWEDLNALL HGFLSLNSPR
201: NHPLILHAFA DLWAPRGGLF CPPSPCLGL
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.