Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G346100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 99.04 | 99.36 |
| HORVU4Hr1G084680.1 | Barley | nucleus | 98.72 | 97.78 |
| Os03t0123500-02 | Rice | nucleus | 90.38 | 89.81 |
| Zm00001d027431_P002 | Maize | nucleus | 88.78 | 89.35 |
| Zm00001d048471_P001 | Maize | nucleus | 88.78 | 87.11 |
| KXG40306 | Sorghum | nucleus | 89.42 | 86.38 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 77.88 | 83.51 |
| KRH27981 | Soybean | nucleus | 66.99 | 74.91 |
| KRH77464 | Soybean | nucleus | 66.99 | 74.38 |
| VIT_02s0025g04630.t01 | Wine grape | nucleus | 68.27 | 73.2 |
| KRH03996 | Soybean | nucleus | 68.27 | 72.95 |
| KRH57265 | Soybean | nucleus | 67.95 | 72.35 |
| CDX93852 | Canola | nucleus | 50.96 | 71.62 |
| Bra036636.1-P | Field mustard | nucleus | 67.31 | 71.43 |
| CDY66559 | Canola | nucleus | 66.99 | 71.09 |
| CDY64892 | Canola | nucleus | 66.99 | 71.09 |
| AT1G62990.1 | Thale cress | nucleus | 66.03 | 70.79 |
| CDY45968 | Canola | nucleus | 65.38 | 69.62 |
| Bra027006.1-P | Field mustard | nucleus | 65.06 | 68.81 |
| Solyc08g080120.2.1 | Tomato | nucleus | 66.99 | 67.42 |
| PGSC0003DMT400058528 | Potato | nucleus | 67.31 | 67.31 |
| TraesCS6A01G145500.1 | Wheat | nucleus | 55.13 | 56.21 |
| TraesCS7A01G511800.2 | Wheat | nucleus | 54.17 | 42.25 |
| TraesCS1A01G072800.1 | Wheat | nucleus | 25.64 | 26.14 |
| TraesCS5A01G405900.1 | Wheat | nucleus | 25.32 | 23.72 |
| TraesCS4A01G292200.1 | Wheat | nucleus | 23.72 | 23.2 |
| TraesCS1A01G072700.1 | Wheat | nucleus | 22.44 | 22.8 |
| TraesCS2A01G267400.1 | Wheat | nucleus | 25.32 | 22.77 |
| TraesCS4A01G256700.1 | Wheat | nucleus | 25.64 | 22.1 |
| TraesCS4A01G291900.1 | Wheat | nucleus | 21.79 | 20.67 |
| TraesCS4A01G292100.1 | Wheat | nucleus | 21.79 | 20.61 |
| TraesCS4A01G292000.1 | Wheat | cytosol, nucleus, plastid | 8.01 | 16.45 |
| TraesCS4A01G251800.1 | Wheat | nucleus | 7.37 | 13.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010089 |
| GO:GO:0010192 | GO:GO:0045892 | GO:GO:2000652 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 |
| PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF74 |
| SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS5A01G515000 |
| EnsemblPlants:TraesCS5A01G515000.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:678269029..678273633
Molecular Weight (calculated)
34440.0 Da
IEP (calculated)
6.090
GRAVY (calculated)
-0.515
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGVGDQGGG MEMSFGGGGG GGGECSSSSA AAVAVAAASA AEAEERQLLK GEMAVHPLCE QLVAAHVGCL RVATPIDHLP LIDAQLAQSS GLLHSYAAHH
101: RPFLSPHDKQ ELDSFLAQYL MLLCSFREQL QQHVRVHAVE AVMACREIEQ SLQDLTGASL EEGTGATMSE DEDEGPPMIM EAAPMDMSSN GHDMMGFGPL
201: VPTDTERSLM ERVRQELKIE LKQGFKSRIG DVREEILRKR RAGKLPGDTT TILKQWWQEH AKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHNN
301: SQTSTLKSKR KR
101: RPFLSPHDKQ ELDSFLAQYL MLLCSFREQL QQHVRVHAVE AVMACREIEQ SLQDLTGASL EEGTGATMSE DEDEGPPMIM EAAPMDMSSN GHDMMGFGPL
201: VPTDTERSLM ERVRQELKIE LKQGFKSRIG DVREEILRKR RAGKLPGDTT TILKQWWQEH AKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHNN
301: SQTSTLKSKR KR
001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
Arabidopsis Description
KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.