Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 94.5 | 96.52 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 93.72 | 94.46 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 70.94 | 75.49 |
| Os04t0577700-01 | Rice | nucleus | 62.57 | 65.12 |
| Zm00001d002594_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 57.85 | 55.67 |
| EES11304 | Sorghum | plastid | 58.38 | 54.52 |
| Zm00001d026061_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 54.19 | 54.05 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 22.51 | 49.43 |
| TraesCS6D01G239400.1 | Wheat | plastid | 36.65 | 47.3 |
| GSMUA_Achr11P... | Banana | plastid | 19.9 | 44.19 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 23.56 | 43.48 |
| TraesCS1D01G191500.1 | Wheat | mitochondrion | 26.7 | 41.46 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 20.94 | 40.82 |
| Solyc11g068780.1.1 | Tomato | cytosol | 13.87 | 38.69 |
| PGSC0003DMT400050511 | Potato | cytosol | 13.35 | 36.69 |
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 21.47 | 36.28 |
| AT3G52525.1 | Thale cress | plastid | 14.4 | 34.59 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 15.45 | 33.15 |
| KRH22646 | Soybean | mitochondrion, nucleus | 15.71 | 32.61 |
| KRH26670 | Soybean | mitochondrion | 15.71 | 32.26 |
| KRH32810 | Soybean | mitochondrion | 14.92 | 32.2 |
| KRH72226 | Soybean | mitochondrion | 14.66 | 32.18 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 15.71 | 31.75 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 15.45 | 31.72 |
| KRH67981 | Soybean | mitochondrion | 15.45 | 31.05 |
| KRG96237 | Soybean | mitochondrion | 15.45 | 30.89 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 14.4 | 30.22 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 14.66 | 30.11 |
| CDX75076 | Canola | nucleus | 14.66 | 30.11 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 14.4 | 29.89 |
| CDY43753 | Canola | nucleus | 14.4 | 29.57 |
| Bra017266.1-P | Field mustard | nucleus | 14.4 | 29.57 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 14.14 | 29.51 |
| KRH30374 | Soybean | nucleus, plastid | 14.14 | 27.41 |
| KRH25295 | Soybean | nucleus, plastid | 13.61 | 26.67 |
| TraesCS3D01G368500.1 | Wheat | plastid | 13.35 | 22.47 |
| TraesCS1D01G275100.1 | Wheat | plastid | 12.3 | 20.52 |
| TraesCS4D01G262000.1 | Wheat | mitochondrion | 13.35 | 18.35 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 15.18 | 17.47 |
| TraesCS3D01G289200.1 | Wheat | nucleus | 13.35 | 17.23 |
| TraesCS2D01G390300.1 | Wheat | mitochondrion | 10.21 | 15.29 |
| TraesCS2D01G105600.1 | Wheat | nucleus | 10.99 | 15.22 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 13.87 | 15.1 |
| TraesCS3D01G339100.1 | Wheat | nucleus | 13.87 | 14.44 |
| TraesCS1D01G299500.1 | Wheat | nucleus | 13.87 | 14.25 |
| TraesCS4D01G171100.1 | Wheat | nucleus, plastid | 11.26 | 14.1 |
| TraesCS1D01G340300.1 | Wheat | nucleus | 12.04 | 13.33 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G394400.1 | EnsemblPlantsGene:TraesCS2D01G394400 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF6 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr2D:-:505840667..505841815
Molecular Weight (calculated)
40780.0 Da
IEP (calculated)
10.986
GRAVY (calculated)
-0.777
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHGVAARKR FGGVGFALGC GCKDPKAVAV AAAAVAASSP RSGTEASTAT TATSRTASRT HPSASTSTGT LTVPSASSSF LWEDADEVEC KRASSATTPS
101: FSGLLRELSE LERSIKSCAR TKSPPRNHFS PPPPPPPPPP PPPPLPSRPV QRRAVRGDDK PSIQEGHGDF SPPRPRPLPP PSLQVPTQQH RRVKSVDKAS
201: KQEGDAHFTP QPPRPLPPPP PLEPVRSAKT EEDNKSKSKE DEKRSPTPQA APKHRKATSC DNSNGNGFGG GSGRLDGSVA VVKQSEDPLG DFRRSMLNMI
301: VENGIVTGDE LRELLRRFLA LNAPRHHDAI LRAFAEIWDE VFAPAAAATA GREPGPAARP TAPRQRTPPR RRQPLPPPAW RV
101: FSGLLRELSE LERSIKSCAR TKSPPRNHFS PPPPPPPPPP PPPPLPSRPV QRRAVRGDDK PSIQEGHGDF SPPRPRPLPP PSLQVPTQQH RRVKSVDKAS
201: KQEGDAHFTP QPPRPLPPPP PLEPVRSAKT EEDNKSKSKE DEKRSPTPQA APKHRKATSC DNSNGNGFGG GSGRLDGSVA VVKQSEDPLG DFRRSMLNMI
301: VENGIVTGDE LRELLRRFLA LNAPRHHDAI LRAFAEIWDE VFAPAAAATA GREPGPAARP TAPRQRTPPR RRQPLPPPAW RV
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.