Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G267400.1 | Wheat | nucleus | 99.14 | 99.14 |
| TraesCS2B01G268200.1 | Wheat | nucleus | 98.56 | 98.56 |
| HORVU2Hr1G061320.3 | Barley | nucleus, plastid | 94.52 | 91.62 |
| Zm00001d018742_P001 | Maize | nucleus | 84.44 | 83.48 |
| Os07t0129700-01 | Rice | nucleus | 85.01 | 83.1 |
| EER95833 | Sorghum | nucleus | 83.57 | 81.46 |
| Zm00001d007842_P002 | Maize | nucleus | 82.42 | 79.44 |
| CDY34012 | Canola | nucleus | 39.48 | 70.98 |
| TraesCS5D01G415900.1 | Wheat | nucleus | 61.38 | 62.83 |
| GSMUA_Achr10P... | Banana | nucleus | 44.09 | 58.85 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 57.06 | 53.51 |
| Solyc04g077210.2.1 | Tomato | nucleus | 54.47 | 53.24 |
| PGSC0003DMT400012712 | Potato | nucleus | 54.18 | 52.22 |
| KRH15482 | Soybean | nucleus | 56.77 | 51.17 |
| KRH61471 | Soybean | nucleus | 53.03 | 50.97 |
| Bra000638.1-P | Field mustard | nucleus | 56.48 | 50.65 |
| KRG88661 | Soybean | nucleus | 56.48 | 50.65 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 52.16 | 50.0 |
| AT4G08150.1 | Thale cress | nucleus | 56.48 | 49.25 |
| CDX83145 | Canola | nucleus | 56.48 | 48.76 |
| TraesCS4D01G019600.1 | Wheat | nucleus | 44.09 | 45.0 |
| TraesCS4D01G019800.1 | Wheat | nucleus | 40.06 | 43.17 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 37.75 | 42.81 |
| TraesCS4D01G019900.1 | Wheat | nucleus | 40.06 | 42.64 |
| CDY68624 | Canola | nucleus | 42.36 | 42.12 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 34.58 | 39.22 |
| TraesCS6D01G134800.1 | Wheat | nucleus | 18.44 | 30.92 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 24.78 | 27.83 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 22.77 | 25.4 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS2D01G256400 | EnsemblPlants:TraesCS2D01G256400.1 |
| TIGR:cd00086 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:310300955..310305105
Molecular Weight (calculated)
38465.4 Da
IEP (calculated)
6.381
GRAVY (calculated)
-0.676
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQRSFGNLG AGEGGSSSSK ASSSFLQLQP LSTTTVASGP GPMGGTYYGT PLALHQAAAA AGSSQYQFHH HKSSGEEISQ AEAEAIKAKI MAHPQYTALL
101: VAYLDCQKVG APPDVLERLT AMAAKLDAHP PGRLHEARDP ELDQFMEAYC NMLAKYREEL TRPIEEAMEF LKRVEAQLDS ITGGGHGSAR LSLADGKCEG
201: AGSSEDEMDA SGRENEPPEI DPRAEDKELK YQLLKKYSGY LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEST GLDQKQINNW
301: FINQRKRHWK PSEDMPFVMM EGFHPQNAAA LYMDGQFMAD GMYSLGS
101: VAYLDCQKVG APPDVLERLT AMAAKLDAHP PGRLHEARDP ELDQFMEAYC NMLAKYREEL TRPIEEAMEF LKRVEAQLDS ITGGGHGSAR LSLADGKCEG
201: AGSSEDEMDA SGRENEPPEI DPRAEDKELK YQLLKKYSGY LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEST GLDQKQINNW
301: FINQRKRHWK PSEDMPFVMM EGFHPQNAAA LYMDGQFMAD GMYSLGS
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.