Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G454600.1 | Wheat | nucleus | 52.24 | 99.43 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 89.25 | 96.76 |
| TraesCS1B01G135600.1 | Wheat | nucleus | 74.63 | 88.97 |
| Zm00001d046568_P001 | Maize | nucleus | 80.6 | 85.44 |
| KXG20488 | Sorghum | nucleus | 80.6 | 84.64 |
| Os06t0646600-01 | Rice | nucleus | 80.9 | 83.9 |
| HORVU7Hr1G114650.2 | Barley | nucleus | 77.61 | 80.5 |
| TraesCS6B01G173900.1 | Wheat | nucleus | 71.34 | 80.2 |
| TraesCS7A01G511800.2 | Wheat | nucleus | 89.55 | 75.0 |
| CDX88165 | Canola | nucleus | 61.19 | 68.56 |
| Solyc08g041820.2.1 | Tomato | nucleus | 60.0 | 57.59 |
| KRG98594 | Soybean | extracellular | 13.73 | 56.1 |
| PGSC0003DMT400040351 | Potato | nucleus | 60.6 | 55.62 |
| TraesCS4B01G346100.1 | Wheat | nucleus | 50.45 | 54.17 |
| CDX78407 | Canola | nucleus | 61.49 | 53.37 |
| Bra006085.1-P | Field mustard | nucleus | 61.49 | 53.37 |
| AT5G11060.1 | Thale cress | nucleus | 61.79 | 52.67 |
| CDY51104 | Canola | nucleus | 61.79 | 52.67 |
| CDX85732 | Canola | nucleus | 61.79 | 52.67 |
| CDY05371 | Canola | nucleus | 63.28 | 52.48 |
| Bra028554.1-P | Field mustard | nucleus | 60.6 | 52.45 |
| KRH05245 | Soybean | nucleus | 63.58 | 51.82 |
| KRH52385 | Soybean | nucleus | 61.19 | 51.51 |
| KRH15810 | Soybean | nucleus | 62.39 | 50.73 |
| KRH61712 | Soybean | nucleus | 62.09 | 50.61 |
| CDY05480 | Canola | nucleus | 62.99 | 50.24 |
| CDX75215 | Canola | nucleus | 55.82 | 50.0 |
| CDX68812 | Canola | nucleus | 55.52 | 49.73 |
| Bra011317.1-P | Field mustard | nucleus | 55.52 | 49.73 |
| AT5G25220.1 | Thale cress | nucleus | 63.88 | 49.65 |
| AT4G32040.1 | Thale cress | nucleus | 55.82 | 48.83 |
| VIT_04s0008g06130.t01 | Wine grape | nucleus | 61.79 | 48.48 |
| Bra009826.1-P | Field mustard | nucleus | 59.7 | 48.31 |
| CDY13472 | Canola | nucleus | 54.93 | 48.17 |
| Bra023965.1-P | Field mustard | nucleus | 54.93 | 48.04 |
| CDX72343 | Canola | nucleus | 55.52 | 46.5 |
| CDX80491 | Canola | nucleus | 61.19 | 46.17 |
| Bra020491.1-P | Field mustard | nucleus | 52.54 | 44.78 |
| CDX70374 | Canola | nucleus | 39.7 | 44.04 |
| TraesCS1B01G091700.1 | Wheat | nucleus | 27.16 | 29.74 |
| TraesCS1B01G091600.1 | Wheat | nucleus | 25.37 | 27.69 |
| TraesCS5B01G410600.1 | Wheat | nucleus | 24.18 | 25.63 |
| TraesCS4B01G021900.2 | Wheat | nucleus | 24.78 | 25.54 |
| TraesCS4B01G057900.1 | Wheat | nucleus | 26.57 | 24.52 |
| TraesCS2B01G268200.1 | Wheat | nucleus | 25.37 | 24.5 |
| TraesCS4B01G022000.1 | Wheat | nucleus | 20.6 | 23.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | PFscan:PS50071 | PFscan:PS51213 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF133 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS7B01G423100 | EnsemblPlants:TraesCS7B01G423100.2 | TIGR:cd00086 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:+:692601025..692604222
Molecular Weight (calculated)
37419.1 Da
IEP (calculated)
7.152
GRAVY (calculated)
-0.716
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQYHHQDH ALGMDPAAAA GNPGGGFAPG LGAGGWEREK AAIEAHPLYE RLLEAHVACL RVATPVDQLP RIDAQVAARA PPPVPPAAAP AGGEELDLFM
101: THYVLLLCSF KEQLQQHVRV HAMEAVMACW ELEQTLQSLT GASPGEGTGA TMSDDEDNPV DSESNMFDGN DVSDGMGFGM LTEGERSLVE RVRQELKHEL
201: KQGYREKLVD IREEILRKRR AGKLPGDTAS TLKAWWQAHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP TSSSSDKSKR KRYGDRPKNN
301: PFITCLKSLR FSFPLFHSQK KKRNNAGEGN AEQSW
101: THYVLLLCSF KEQLQQHVRV HAMEAVMACW ELEQTLQSLT GASPGEGTGA TMSDDEDNPV DSESNMFDGN DVSDGMGFGM LTEGERSLVE RVRQELKHEL
201: KQGYREKLVD IREEILRKRR AGKLPGDTAS TLKAWWQAHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP TSSSSDKSKR KRYGDRPKNN
301: PFITCLKSLR FSFPLFHSQK KKRNNAGEGN AEQSW
001: MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
101: GETILGVVGG EDWRSASYKA AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF MSHYVVLLCS FKEQLQHHVC
201: VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE
301: IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR NWNSNSSTSS TLTKNKRKRT GKS
Arabidopsis Description
KNAT5KNAT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.