Factsheet for TraesCS5D01G195300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G135600.1
TraesCS5B01G454600.1
TraesCS6A01G145500.1
TraesCS6B01G173900.1
TraesCS6D01G134800.1
TraesCS7A01G511800.2
TraesCS7B01G423100.2
TraesCS7D01G501000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79960.1	TraesCS1B01G135600.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS5B01G454600.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6A01G145500.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6B01G173900.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS6D01G134800.1	AT5G25220.1	15781858
AT1G79960.1	TraesCS7A01G511800.2	AT5G25220.1	15781858
AT1G79960.1	TraesCS7B01G423100.2	AT5G25220.1	15781858
AT1G79960.1	TraesCS7D01G501000.1	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G056810.1	Barley	nucleus	86.03	86.99
TraesCS5B01G187700.1	Wheat	nucleus	82.72	83.03
TraesCS5A01G195700.1	Wheat	nucleus, plastid	81.99	81.99
Zm00001d020198_P001	Maize	nucleus	47.06	50.0
EER96623	Sorghum	nucleus	44.85	45.35
GSMUA_Achr8P04020_001	Banana	mitochondrion	29.78	30.92
KRH09849	Soybean	mitochondrion, nucleus	25.0	27.31
TraesCS6D01G041100.1	Wheat	nucleus, plastid	21.69	24.69
AT1G79960.1	Thale cress	nucleus, plastid	23.9	22.11
CDX87287	Canola	nucleus, plastid	23.16	22.03
Bra035202.1-P	Field mustard	nucleus, plastid	23.16	22.03
TraesCS4D01G273800.1	Wheat	mitochondrion	16.54	21.84
CDY58777	Canola	nucleus, plastid	22.79	21.75
VIT_09s0002g04630.t01	Wine grape	mitochondrion, nucleus	22.06	21.58
KRH47051	Soybean	nucleus	22.06	21.28
Solyc03g120190.2.1	Tomato	plastid	20.22	20.0
PGSC0003DMT400014515	Potato	nucleus	20.22	19.1
KRH44372	Soybean	nucleus	12.5	18.09
CDY37564	Canola	plastid	19.49	17.97
Bra008500.1-P	Field mustard	plastid	19.49	17.97
CDY41111	Canola	plastid	19.49	17.79

Protein Annotations

EnsemblPlants:TraesCS5D01G195300.1	EnsemblPlantsGene:TraesCS5D01G195300	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF29	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	MapMan:15.5.37

Description

No Description!

Coordinates

chr5D:+:298933827..298934645

Molecular Weight (calculated)

29259.9 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.794

Length

272 amino acids

Sequence
(BLAST)

001: MEGMEDEAKK KKKRSKKRAR LKKFLHFPKA LKKLHGHGRP SANDNPSPSP SAAAAAGSLL SACMHPRTNS FSSGVRQRHV AAGNRDDDDG DGALAVNFRS
101: LRVGPTAVPD DDDDGDDEDG SSTQEDDGGS ESDGGDVVAG MAAKKVVSGG SGCGVAVVTL SVAPYEDFRR SMREMADAHA RVEAARVGTR AATAVDWDFM
201: EELLFCYLQL NDRAVHKDIL RAFTDTVAAL RRRRRAPAPK PKSRRTRQPR RGARGSGVDD DDDVDEAVDS NS

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.