Factsheet for VIT_09s0002g04630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09849	Soybean	mitochondrion, nucleus	36.33	40.56
Solyc03g120190.2.1	Tomato	plastid	36.69	37.09
PGSC0003DMT400014515	Potato	nucleus	37.77	36.46
GSMUA_Achr8P04020_001	Banana	mitochondrion	33.09	35.11
TraesCS6D01G041100.1	Wheat	nucleus, plastid	29.5	34.31
TraesCS6A01G035700.1	Wheat	nucleus	29.86	34.16
Zm00001d044357_P001	Maize	cytosol	29.14	34.03
Bra035202.1-P	Field mustard	nucleus, plastid	33.81	32.87
CDX87287	Canola	nucleus, plastid	33.81	32.87
CDY58777	Canola	nucleus, plastid	33.45	32.63
HORVU6Hr1G006440.1	Barley	cytosol	28.78	32.39
EES00995	Sorghum	nucleus	27.34	32.34
AT1G79960.1	Thale cress	nucleus, plastid	34.17	32.31
TraesCS6B01G050100.1	Wheat	nucleus	26.98	31.38
EER92063	Sorghum	nucleus	26.62	31.36
VIT_05s0020g03520.t01	Wine grape	plastid	23.38	29.15
KRH47051	Soybean	nucleus	29.5	29.08
CDY37564	Canola	plastid	29.86	28.14
Bra008500.1-P	Field mustard	plastid	29.86	28.14
CDY41111	Canola	plastid	29.14	27.18
KRH44372	Soybean	nucleus	17.63	26.06
TraesCS5B01G187700.1	Wheat	nucleus	22.66	23.25
TraesCS5A01G195700.1	Wheat	nucleus, plastid	22.66	23.16
HORVU5Hr1G056810.1	Barley	nucleus	21.94	22.68
Zm00001d020198_P001	Maize	nucleus	20.86	22.66
TraesCS5D01G195300.1	Wheat	nucleus	21.58	22.06
EER96623	Sorghum	nucleus	20.5	21.19

Protein Annotations

EntrezGene:100242914	wikigene:100242914	MapMan:15.5.37	ProteinID:CCB59482	ProteinID:CCB59482.1	UniProt:F6HYF9
EMBL:FN596494	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	InterPro:IPR006458	EntrezGene:LOC100242914	wikigene:LOC100242914	InterPro:Ovate	InterPro:Ovate_C
PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF29	TIGRFAMs:TIGR01568	UniParc:UPI000198405D
ArrayExpress:VIT_09s0002g04630	EnsemblPlantsGene:VIT_09s0002g04630	EnsemblPlants:VIT_09s0002g04630.t01	RefSeq:XP_002279759	RefSeq:XP_002279759.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:4189962..4190834

Molecular Weight (calculated)

31598.7 Da

IEP (calculated)

4.605

GRAVY (calculated)

-0.698

Length

278 amino acids

Sequence
(BLAST)

001: MPRKIQKSLQ DYLSKLKKPT PHIQLSANNA LSASINRMLL GCKYPKTLID VDRDQTNSRG SDHGHAATLS DIDRFLFENF RSLYQKNDDD DDDDDDTKKR
101: EEEEEEEEEE KPGGVLFESP RIMDPTSNIC SCHRFFTTPC SSSSLMEDAR ASLAVSSEGI ASSYATSSTS TVDCSSSSSN DIKEVLAPHD CIAVLTNSPN
201: PYVDFRLSMQ EMIEARLHSH EKVDWDFMED LLFCYLNLND KDSHKYILQA FVDLICVLRQ KTDKVSMNAR GEGEWRRE

Best Arabidopsis Sequence Match ( AT1G79960.1 )
(BLAST)

001: MPNPLQKSLH GYLSKIKKET GKLQLSSSHS FSSSKNWVLG KHPKKLSFSF KHRRRSSKTR FSKEEPVYHQ DSAHAATLSD IDRFLEENFK SLCIRDDQED
101: DQHQARVTKN KEKRESSSDD SDDDDDDDDY RHRFERTWGH AVYDSPKQPP DLLRTERLSP PPGSSEGRPS METTSTSSER QSRSTLVLPE NCIAVLRYTD
201: EPQEDFRQSM VEMMESKLGM RESEVDWDLM EELLFCYLDL NDKKSHKFIL SAFVDLIIAL REKEKRITRK GHVRSLSTRA ARDRLRKRMI MSDN

Arabidopsis Description

OFP14OFP14 [Source:UniProtKB/TrEMBL;Acc:A0A178W942]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.