Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G041100.1 | Wheat | nucleus, plastid | 77.82 | 77.82 |
| TraesCS6A01G035700.1 | Wheat | nucleus | 77.41 | 76.13 |
| HORVU6Hr1G006440.1 | Barley | cytosol | 75.31 | 72.87 |
| Zm00001d044357_P001 | Maize | cytosol | 58.58 | 58.82 |
| EES00995 | Sorghum | nucleus | 57.32 | 58.3 |
| EER92063 | Sorghum | nucleus | 55.65 | 56.36 |
| GSMUA_Achr8P04020_001 | Banana | mitochondrion | 36.4 | 33.21 |
| KRH09849 | Soybean | mitochondrion, nucleus | 28.87 | 27.71 |
| VIT_09s0002g04630.t01 | Wine grape | mitochondrion, nucleus | 31.38 | 26.98 |
| Solyc03g120190.2.1 | Tomato | plastid | 30.13 | 26.18 |
| PGSC0003DMT400014515 | Potato | nucleus | 30.13 | 25.0 |
| TraesCS5B01G187700.1 | Wheat | nucleus | 25.94 | 22.88 |
| KRH47051 | Soybean | nucleus | 25.94 | 21.99 |
| CDY58777 | Canola | nucleus, plastid | 25.94 | 21.75 |
| CDX87287 | Canola | nucleus, plastid | 25.94 | 21.68 |
| Bra035202.1-P | Field mustard | nucleus, plastid | 25.94 | 21.68 |
| AT1G79960.1 | Thale cress | nucleus, plastid | 26.36 | 21.43 |
| TraesCS4B01G275200.1 | Wheat | mitochondrion | 17.57 | 20.59 |
| CDY37564 | Canola | plastid | 23.01 | 18.64 |
| Bra008500.1-P | Field mustard | plastid | 23.01 | 18.64 |
| CDY41111 | Canola | plastid | 22.18 | 17.79 |
| KRH44372 | Soybean | nucleus | 10.46 | 13.3 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G050100.1 | EnsemblPlantsGene:TraesCS6B01G050100 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF29 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr6B:-:29756741..29757460
Molecular Weight (calculated)
26682.3 Da
IEP (calculated)
8.688
GRAVY (calculated)
-0.665
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDERKRAKL RKSLQLCITR KLKKIPPVHI PSSTIPATIA SRRRLLSTCG FPRTQSLDID QAATATNNNN NNGGGHAATL SDVNRFLFDN FRSLYIHDRD
101: DNVRLPLSPG TSSTSAVDET QATAGTSSLS DSVTEDTGKA GSGDDTGDDA AIVLFSMDPY TDFRRSMQNM IKMHHGQESR PLDWDFLEEL LFYYLQLNDQ
201: SVHRHILKAF ADLTAGTHKD IPARGKPNWA DKSVRSRKY
101: DNVRLPLSPG TSSTSAVDET QATAGTSSLS DSVTEDTGKA GSGDDTGDDA AIVLFSMDPY TDFRRSMQNM IKMHHGQESR PLDWDFLEEL LFYYLQLNDQ
201: SVHRHILKAF ADLTAGTHKD IPARGKPNWA DKSVRSRKY
001: MVRKMKLPFL NKNTSSSSFS SNSSSSSSSW PWPSSHQQNL KTISSKASFI VNKPKDVYEP EPPPRSFSSS PSSSSYSSFS STSHAIENPP EIESIENVIK
101: GLKSSKRLIF ERRGTSNSIL EEATKRDDHE EEEDGLMLLS LESNDPYTDF KNSMEKMVEV HVLHHDWISL EKLLFWFLKV NVKASHRYIF AAFVDLVLNL
201: AVGPSKDVAG EPNSDVVVED SLSSSWPVSL YSSSDENSST SVRFLPETSI GEKGRDVCCL SSLFELEEKI KDNIDPNDYV SS
101: GLKSSKRLIF ERRGTSNSIL EEATKRDDHE EEEDGLMLLS LESNDPYTDF KNSMEKMVEV HVLHHDWISL EKLLFWFLKV NVKASHRYIF AAFVDLVLNL
201: AVGPSKDVAG EPNSDVVVED SLSSSWPVSL YSSSDENSST SVRFLPETSI GEKGRDVCCL SSLFELEEKI KDNIDPNDYV SS
Arabidopsis Description
OFP18Transcription repressor OFP18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVD5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.